Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 349-594 |
| Cow position: | chr9:41954028-41954265 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 48, 131 |
| Conread position: | 357-512 |
| Cow position: | chr9:25800364-25800515 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 358-589 |
| Cow position: | chr9:9733438-9733209 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 358-589 |
| Cow position: | chr9:36396751-36396982 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 15 |
| Conread position: | 358-589 |
| Cow position: | chr9:51279836-51280067 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 59, 40 |
| Conread position: | 358-594 |
| Cow position: | chr9:25794376-25794608 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 90 |
| Conread position: | 358-594 |
| Cow position: | chr9:44609782-44610011 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 358-597 |
| Cow position: | chr9:64594616-64594388 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 215, 30 |
| Conread position: | 359-593 |
| Cow position: | chr9:36426073-36426306 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 359-706 |
| Cow position: | chr9:23518879-23518540 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 42 |
| Conread position: | 360-575 |
| Cow position: | chr9:7798552-7798764 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 360-588 |
| Cow position: | chr9:46090651-46090438 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 179, 44 |
| Conread position: | 360-589 |
| Cow position: | chr9:63662311-63662091 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 95, 57 |
| Conread position: | 360-593 |
| Cow position: | chr9:10290376-10290144 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 79 |
| Conread position: | 360-594 |
| Cow position: | chr9:6126964-6126741 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 182 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 360-594 |
| Cow position: | chr9:6134096-6133867 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 360-594 |
| Cow position: | chr9:45406725-45406952 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 212, 42 |
| Conread position: | 362-566 |
| Cow position: | chr9:61851727-61851515 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 362-592 |
| Cow position: | chr9:21499745-21499524 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 364-587 |
| Cow position: | chr9:15223890-15223668 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 364-594 |
| Cow position: | chr9:56294097-56294316 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 209, 135 |
| Conread position: | 366-528 |
| Cow position: | chr9:46990380-46990228 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 366-578 |
| Cow position: | chr9:25574551-25574750 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 9 |
| Conread position: | 366-586 |
| Cow position: | chr9:6590059-6590281 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 369-558 |
| Cow position: | chr9:36681733-36681913 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 172, 35 |
| Conread position: | 384-594 |
| Cow position: | chr9:10160364-10160160 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 88, 130 |
| Conread position: | 400-594 |
| Cow position: | chr9:8847871-8848059 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 8, 61 |
| Conread position: | 407-599 |
| Cow position: | chr9:5478707-5478889 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 412-593 |
| Cow position: | chr9:54107932-54107754 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 125, 27 |
| Conread position: | 418-607 |
| Cow position: | chr9:26528557-26528744 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 130 |
| Conread position: | 434-589 |
| Cow position: | chr9:51276172-51276016 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 469-580 |
| Cow position: | chr9:56082440-56082329 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 68, 94 |
Show alignments to all cow chromosomes.