Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 352-593 |
| Cow position: | chrX:38674911-38674669 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 357-510 |
| Cow position: | chrX:6999602-6999449 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 357-589 |
| Cow position: | chrX:3513268-3513498 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 357-594 |
| Cow position: | chrX:29815820-29815585 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 358-504 |
| Cow position: | chrX:31910711-31910862 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 358-589 |
| Cow position: | chrX:1742931-1743165 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 41, 100 |
| Conread position: | 358-589 |
| Cow position: | chrX:38741137-38740910 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 121 |
| Conread position: | 358-594 |
| Cow position: | chrX:34704450-34704677 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 204, 42 |
| Conread position: | 358-603 |
| Cow position: | chrX:27529607-27529366 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 129 |
| Conread position: | 359-567 |
| Cow position: | chrX:25180430-25180225 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 360-554 |
| Cow position: | chrX:40315860-40315666 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 159 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 36 |
| Conread position: | 360-588 |
| Cow position: | chrX:12834978-12834760 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 360-589 |
| Cow position: | chrX:33159066-33158836 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 360-590 |
| Cow position: | chrX:34767793-34768041 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 360-594 |
| Cow position: | chrX:35981694-35981466 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 360-601 |
| Cow position: | chrX:3450799-3451041 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 361-512 |
| Cow position: | chrX:10062244-10062093 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 361-563 |
| Cow position: | chrX:37251484-37251283 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 156 |
| Conread position: | 361-595 |
| Cow position: | chrX:16893598-16893368 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 362-591 |
| Cow position: | chrX:38129237-38129471 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 142 |
| Conread position: | 364-473 |
| Cow position: | chrX:23320511-23320402 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 364-509 |
| Cow position: | chrX:34635530-34635675 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 364-594 |
| Cow position: | chrX:19738131-19737911 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 205, 58 |
| Conread position: | 370-599 |
| Cow position: | chrX:832294-832071 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 371-582 |
| Cow position: | chrX:34213818-34213611 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 71, 35 |
| Conread position: | 380-594 |
| Cow position: | chrX:29145479-29145269 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 403-652 |
| Cow position: | chrX:28847810-28848055 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 171, 104 |
| Conread position: | 407-539 |
| Cow position: | chrX:29539082-29538950 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 411-589 |
| Cow position: | chrX:36874174-36873999 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 131, 101 |
| Conread position: | 423-594 |
| Cow position: | chrX:25179639-25179475 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 424-542 |
| Cow position: | chrX:34626619-34626737 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 447-594 |
| Cow position: | chrX:23323112-23323253 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 448-594 |
| Cow position: | chrX:33008528-33008386 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 460-708 |
| Cow position: | chrX:19049128-19049377 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 84 |
| Conread position: | 482-593 |
| Cow position: | chrX:31911101-31911212 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 94 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 572-710 |
| Cow position: | chrX:42467666-42467528 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 61 |
| Conread position: | 590-708 |
| Cow position: | chrX:18080185-18080068 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 71, 0 |
Show alignments to all cow chromosomes.