Cow genome map

Conread name: Ss1.1-Pig3-SRG8006P11.3

Conread position: 43-334
Cow position: chr1:48454521-48454226 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 31, 7

Conread position: 43-367
Cow position: chr1:73744733-73745070 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 44, 5

Conread position: 50-382
Cow position: chr1:95069651-95069305 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 227
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 137

Conread position: 54-381
Cow position: chr1:32906326-32906668 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 235
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 31

Conread position: 61-378
Cow position: chr1:49435389-49435063 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 221
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 17, 65

Conread position: 62-368
Cow position: chr1:2427291-2426978 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 206
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 100

Conread position: 74-372
Cow position: chr1:93796002-93795699 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 73, 38

Conread position: 75-378
Cow position: chr1:58873750-58874064 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 72, 146

Conread position: 75-380
Cow position: chr1:67651459-67651140 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 229
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 14, 37

Conread position: 76-354
Cow position: chr1:77723708-77723420 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 67, 33

Conread position: 76-358
Cow position: chr1:63085582-63085879 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 71, 24

Conread position: 76-372
Cow position: chr1:43820543-43820240 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 209
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 71, 156

Conread position: 76-383
Cow position: chr1:50874169-50874480 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 47, 13

Conread position: 77-347
Cow position: chr1:3408512-3408790 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 66, 109

Conread position: 77-368
Cow position: chr1:35756233-35756529 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 188
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 78, 123

Conread position: 79-378
Cow position: chr1:74014665-74014348 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 264

Conread position: 81-369
Cow position: chr1:2962594-2962881 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 7, 112

Conread position: 84-376
Cow position: chr1:62623696-62623991 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 209
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 67, 117

Conread position: 84-378
Cow position: chr1:56821215-56820904 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 210
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 63, 117

Conread position: 87-326
Cow position: chr1:57042756-57042993 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 113, 54

Conread position: 87-330
Cow position: chr1:35559908-35560156 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 60, 135

Conread position: 87-347
Cow position: chr1:90683061-90682797 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 182
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 92

Conread position: 87-353
Cow position: chr1:54410543-54410276 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 183
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 12, 230

Conread position: 87-362
Cow position: chr1:15514443-15514728 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 20

Conread position: 87-368
Cow position: chr1:60282616-60282908 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 200
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 59, 115

Conread position: 87-372
Cow position: chr1:100950566-100950281 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 78, 29

Conread position: 87-373
Cow position: chr1:32774981-32774688 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 198
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 58, 34

Conread position: 87-380
Cow position: chr1:73659452-73659754 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 76, 70

Conread position: 87-383
Cow position: chr1:2064587-2064286 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 58, 124

Conread position: 87-384
Cow position: chr1:53008852-53008542 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 15, 109

Conread position: 87-384
Cow position: chr1:83055160-83055453 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 206
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 60, 26

Conread position: 87-393
Cow position: chr1:7390304-7389987 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 218
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 60, 120

Conread position: 88-345
Cow position: chr1:100818150-100817892 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 98

Conread position: 88-352
Cow position: chr1:30559833-30559551 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 197
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 57, 91

Conread position: 88-359
Cow position: chr1:77777026-77777301 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 194
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 57, 28

Conread position: 88-367
Cow position: chr1:45233361-45233648 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 133

Conread position: 88-373
Cow position: chr1:32700859-32700582 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 58, 114

Conread position: 88-373
Cow position: chr1:54480492-54480792 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 210
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 213

Conread position: 88-373
Cow position: chr1:102272343-102272050 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 59, 19

Conread position: 88-378
Cow position: chr1:83481012-83480716 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 199
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 59, 151

Conread position: 88-379
Cow position: chr1:37259459-37259167 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 56, 94

Conread position: 88-394
Cow position: chr1:72287913-72288231 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 59, 88

Conread position: 89-346
Cow position: chr1:96189996-96189726 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 13, 114

Conread position: 89-367
Cow position: chr1:82386182-82385893 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 57, 254

Conread position: 89-400
Cow position: chr1:42742364-42742042 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 222
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 24, 111

Conread position: 90-338
Cow position: chr1:66177664-66177909 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 56, 36

Conread position: 90-358
Cow position: chr1:33768089-33768347 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 57, 14

Conread position: 90-359
Cow position: chr1:37652995-37653267 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 192
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 58, 120

Conread position: 90-366
Cow position: chr1:56072251-56071982 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 200
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 57, 92

Conread position: 90-376
Cow position: chr1:73656238-73656536 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 213
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 18, 24

Conread position: 90-381
Cow position: chr1:73074140-73073850 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 195
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 6

Conread position: 91-378
Cow position: chr1:4038581-4038297 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 55, 161

Conread position: 92-362
Cow position: chr1:87033239-87032971 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 192
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 51, 110

Conread position: 92-408
Cow position: chr1:63108222-63108551 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 218
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 37, 124

Conread position: 93-342
Cow position: chr1:51421862-51422116 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 172
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 122

Conread position: 100-378
Cow position: chr1:227049-226767 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 47, 106

Conread position: 101-368
Cow position: chr1:102269969-102270249 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 192
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 44, 83

Conread position: 102-377
Cow position: chr1:52252139-52251866 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 28

Conread position: 111-369
Cow position: chr1:45426453-45426183 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 183
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 167

Conread position: 112-384
Cow position: chr1:65033215-65033493 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 194
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 34, 14

Conread position: 114-342
Cow position: chr1:36862132-36861905 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 172
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 88

Conread position: 115-345
Cow position: chr1:25749729-25749500 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 167
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 48, 86

Conread position: 141-376
Cow position: chr1:33568294-33568054 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 170
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 28, 19

Conread position: 148-365
Cow position: chr1:83666671-83666456 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 82, 28

Conread position: 148-377
Cow position: chr1:2170554-2170326 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 162
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 43, 55

Conread position: 148-378
Cow position: chr1:26698480-26698718 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 21, 187

Conread position: 148-384
Cow position: chr1:55162212-55162452 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 176
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 31, 49

Conread position: 148-389
Cow position: chr1:277776-277543 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 53, 106

Conread position: 152-381
Cow position: chr1:94030143-94029909 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 171
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 87, 45

Conread position: 157-362
Cow position: chr1:46601182-46600969 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 160
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 52, 83

Conread position: 157-378
Cow position: chr1:42985130-42985349 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 71, 112

Conread position: 161-362
Cow position: chr1:43230405-43230200 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 78, 154

Conread position: 162-377
Cow position: chr1:73961336-73961115 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 74, 34

Conread position: 166-380
Cow position: chr1:18494917-18495131 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 102

Conread position: 176-368
Cow position: chr1:15901834-15901651 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 73, 0

Conread position: 186-377
Cow position: chr1:56029143-56028958 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 53, 60

Conread position: 204-362
Cow position: chr1:15933175-15933019 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 27, 15

Conread position: 207-381
Cow position: chr1:84734182-84734352 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 20, 0

Conread position: 213-374
Cow position: chr1:71901200-71901042 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 18, 6

Conread position: 215-368
Cow position: chr1:23799122-23799274 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 110
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 76, 0

Conread position: 215-380
Cow position: chr1:89406880-89407044 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 20, 76

Conread position: 217-357
Cow position: chr1:97885139-97885001 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 218-380
Cow position: chr1:15798432-15798593 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 13, 68

Conread position: 220-361
Cow position: chr1:98916083-98916220 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 71, 0

Conread position: 220-381
Cow position: chr1:44092610-44092451 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 11, 71

Conread position: 222-378
Cow position: chr1:25915962-25916111 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 223-354
Cow position: chr1:51350927-51350795 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 8, 106

Conread position: 223-380
Cow position: chr1:69775565-69775411 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 108

Conread position: 224-352
Cow position: chr1:26770472-26770599 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 224-368
Cow position: chr1:13922-14064 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 229-377
Cow position: chr1:273697-273552 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 13, 62

Conread position: 229-378
Cow position: chr1:78371942-78372088 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 234-367
Cow position: chr1:85376333-85376201 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 77, 94

Conread position: 236-378
Cow position: chr1:69332800-69332665 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 241-382
Cow position: chr1:35133544-35133405 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 29

Conread position: 246-381
Cow position: chr1:14291403-14291270 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 0

Conread position: 253-380
Cow position: chr1:19297919-19298043 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 257-362
Cow position: chr1:44730502-44730606 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 91
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 82, 0

Conread position: 258-376
Cow position: chr1:4750751-4750866 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 263-378
Cow position: chr1:55134410-55134297 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 49, 27

Conread position: 263-378
Cow position: chr1:78304925-78304810 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 102

Conread position: 267-408
Cow position: chr1:19002010-19001870 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 104, 59

Conread position: 271-378
Cow position: chr1:74011331-74011223 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 84, 0

Show alignments to all cow chromosomes.