Cow genome map

Conread name: Ss1.1-Pig3-SRG8006P11.3

Conread position: 8-380
Cow position: chr10:64457871-64457508 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 243
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 121, 27

Conread position: 43-354
Cow position: chr10:5827917-5827596 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 7

Conread position: 50-367
Cow position: chr10:13212757-13212434 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 94, 42

Conread position: 60-379
Cow position: chr10:60911301-60910982 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 213
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 25, 234

Conread position: 61-354
Cow position: chr10:56976178-56976472 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 210
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 34

Conread position: 62-378
Cow position: chr10:55908840-55908513 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 232
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 22, 49

Conread position: 75-335
Cow position: chr10:52612453-52612720 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 74, 14

Conread position: 75-387
Cow position: chr10:40877222-40877548 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 70, 230

Conread position: 76-347
Cow position: chr10:69262885-69262604 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 36, 98

Conread position: 79-368
Cow position: chr10:51774550-51774831 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 79-378
Cow position: chr10:47555574-47555886 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 212
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 49, 120

Conread position: 81-373
Cow position: chr10:39147616-39147332 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 64, 123

Conread position: 81-377
Cow position: chr10:6906592-6906274 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 221
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 8, 134

Conread position: 82-362
Cow position: chr10:23851115-23851390 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 135, 5

Conread position: 82-370
Cow position: chr10:19599081-19599388 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 212
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 65, 222

Conread position: 83-380
Cow position: chr10:50094203-50094506 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 213
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 65, 87

Conread position: 84-301
Cow position: chr10:49197585-49197806 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 63, 37

Conread position: 84-378
Cow position: chr10:43697118-43697410 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 61, 151

Conread position: 86-372
Cow position: chr10:21408871-21408576 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 203
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 60, 36

Conread position: 87-327
Cow position: chr10:24879729-24879480 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 181
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 56, 6

Conread position: 87-368
Cow position: chr10:6636592-6636860 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 186
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 87-380
Cow position: chr10:45351870-45352173 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 70, 209

Conread position: 87-383
Cow position: chr10:30205105-30205408 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 208
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 25, 210

Conread position: 87-392
Cow position: chr10:59534100-59534402 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 203
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 116

Conread position: 88-326
Cow position: chr10:37379824-37380072 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 176
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 59, 118

Conread position: 88-345
Cow position: chr10:29709531-29709265 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 116, 185

Conread position: 88-348
Cow position: chr10:27239615-27239367 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 195
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 59, 111

Conread position: 88-411
Cow position: chr10:1942531-1942858 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 221
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 111

Conread position: 89-334
Cow position: chr10:11348825-11349075 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 6

Conread position: 89-362
Cow position: chr10:45988833-45988562 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 184
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 69, 153

Conread position: 89-380
Cow position: chr10:17412178-17411878 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 198
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 34, 17

Conread position: 90-354
Cow position: chr10:3945277-3945547 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 187
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 57, 113

Conread position: 90-362
Cow position: chr10:20922354-20922074 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 194
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 23

Conread position: 90-373
Cow position: chr10:24111896-24111609 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 204
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 57, 80

Conread position: 90-381
Cow position: chr10:43279412-43279709 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 33, 119

Conread position: 93-384
Cow position: chr10:52987606-52987911 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 202
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 73, 103

Conread position: 93-389
Cow position: chr10:10514504-10514803 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 200
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 68, 18

Conread position: 93-389
Cow position: chr10:33812221-33812520 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 34

Conread position: 98-340
Cow position: chr10:9650162-9649911 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 172
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 49, 181

Conread position: 100-366
Cow position: chr10:55377472-55377752 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 46, 22

Conread position: 100-384
Cow position: chr10:62858085-62857796 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 195
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 47, 226

Conread position: 103-380
Cow position: chr10:500380-500656 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 205
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 44, 99

Conread position: 122-378
Cow position: chr10:7297161-7296913 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 161, 10

Conread position: 139-382
Cow position: chr10:23570153-23570403 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 74, 37

Conread position: 148-361
Cow position: chr10:476051-476261 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 153
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 77, 43

Conread position: 148-362
Cow position: chr10:7235762-7235556 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 150
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 49

Conread position: 148-365
Cow position: chr10:54184664-54184883 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 181

Conread position: 148-368
Cow position: chr10:65648151-65647925 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 148-368
Cow position: chr10:66056238-66056015 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 83, 16

Conread position: 148-372
Cow position: chr10:50579901-50579674 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 150

Conread position: 148-373
Cow position: chr10:49202364-49202579 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 159
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 57, 17

Conread position: 148-378
Cow position: chr10:15184718-15184952 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 21

Conread position: 150-368
Cow position: chr10:3362843-3363055 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 101, 75

Conread position: 160-378
Cow position: chr10:5378100-5377890 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 150
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 36

Conread position: 163-386
Cow position: chr10:54162323-54162554 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 157
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 168-376
Cow position: chr10:17370834-17371049 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 57, 166

Conread position: 185-378
Cow position: chr10:19582627-19582821 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 15, 31

Conread position: 205-341
Cow position: chr10:20134345-20134211 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 107
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 208-354
Cow position: chr10:69963209-69963354 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 84

Conread position: 215-373
Cow position: chr10:982941-982785 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 51

Conread position: 215-376
Cow position: chr10:38216751-38216911 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 16, 37

Conread position: 215-378
Cow position: chr10:25492360-25492518 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 118
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 215-382
Cow position: chr10:18253792-18253626 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 16, 71

Conread position: 220-378
Cow position: chr10:61618142-61618300 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 111

Conread position: 223-373
Cow position: chr10:66090382-66090234 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 8, 64

Conread position: 231-354
Cow position: chr10:61366354-61366475 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 232-377
Cow position: chr10:33802972-33802828 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 234-357
Cow position: chr10:8226176-8226056 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 234-385
Cow position: chr10:14149556-14149709 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 135, 0

Conread position: 235-377
Cow position: chr10:4821533-4821673 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 96, 0

Conread position: 236-362
Cow position: chr10:53471327-53471201 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 241-396
Cow position: chr10:50775194-50775349 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 14, 23

Conread position: 250-351
Cow position: chr10:22419627-22419728 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 256-378
Cow position: chr10:25103925-25103803 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 93, 7

Conread position: 258-378
Cow position: chr10:17451001-17450881 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 269-378
Cow position: chr10:27503257-27503367 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.