Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 48-378 |
| Cow position: | chr11:18357609-18357260 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 37, 130 |
| Conread position: | 49-380 |
| Cow position: | chr11:72454423-72454081 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 98, 20 |
| Conread position: | 60-376 |
| Cow position: | chr11:34115501-34115832 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 124 |
| Conread position: | 60-379 |
| Cow position: | chr11:33987315-33987642 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 25, 213 |
| Conread position: | 61-377 |
| Cow position: | chr11:15115667-15115341 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 26, 205 |
| Conread position: | 75-340 |
| Cow position: | chr11:56268523-56268783 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 72, 14 |
| Conread position: | 75-378 |
| Cow position: | chr11:8752319-8752624 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 82, 54 |
| Conread position: | 76-354 |
| Cow position: | chr11:21848293-21848593 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 76-388 |
| Cow position: | chr11:11744948-11744636 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 72, 165 |
| Conread position: | 77-377 |
| Cow position: | chr11:25167135-25166831 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 82-358 |
| Cow position: | chr11:46104120-46104400 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 65, 5 |
| Conread position: | 84-370 |
| Cow position: | chr11:66057645-66057946 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 63, 111 |
| Conread position: | 84-378 |
| Cow position: | chr11:28220793-28221100 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 64, 102 |
| Conread position: | 87-361 |
| Cow position: | chr11:55933722-55933432 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 56, 213 |
| Conread position: | 87-362 |
| Cow position: | chr11:66871465-66871755 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 87-378 |
| Cow position: | chr11:65373142-65372848 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 109 |
| Conread position: | 87-412 |
| Cow position: | chr11:41280117-41280452 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 120 |
| Conread position: | 88-359 |
| Cow position: | chr11:80319617-80319899 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 88-378 |
| Cow position: | chr11:34642962-34643260 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 97 |
| Conread position: | 88-378 |
| Cow position: | chr11:42393232-42392933 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 80 |
| Conread position: | 88-384 |
| Cow position: | chr11:11742988-11743290 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 133 |
| Conread position: | 89-345 |
| Cow position: | chr11:2328150-2327885 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 89-354 |
| Cow position: | chr11:84386753-84387015 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 89-367 |
| Cow position: | chr11:65156038-65155748 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 89-368 |
| Cow position: | chr11:24514407-24514692 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 34, 104 |
| Conread position: | 89-368 |
| Cow position: | chr11:54056342-54056061 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 89-380 |
| Cow position: | chr11:19848180-19848481 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 113 |
| Conread position: | 89-415 |
| Cow position: | chr11:61470039-61469702 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 90-372 |
| Cow position: | chr11:52237271-52236980 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 107 |
| Conread position: | 90-377 |
| Cow position: | chr11:22296285-22295981 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 29, 114 |
| Conread position: | 91-338 |
| Cow position: | chr11:39278622-39278362 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 170 |
| Conread position: | 91-400 |
| Cow position: | chr11:66226422-66226111 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 22 |
| Conread position: | 93-373 |
| Cow position: | chr11:20558630-20558910 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 84 |
| Conread position: | 93-378 |
| Cow position: | chr11:76959054-76958781 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 115, 72 |
| Conread position: | 98-373 |
| Cow position: | chr11:7434412-7434685 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 88 |
| Conread position: | 98-378 |
| Cow position: | chr11:13267352-13267638 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 49, 68 |
| Conread position: | 98-378 |
| Cow position: | chr11:56638938-56639212 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 126 |
| Conread position: | 102-376 |
| Cow position: | chr11:75576240-75576523 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 43, 102 |
| Conread position: | 103-378 |
| Cow position: | chr11:1538588-1538311 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 39, 82 |
| Conread position: | 104-353 |
| Cow position: | chr11:48040889-48040634 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 135-427 |
| Cow position: | chr11:75268513-75268800 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 31, 9 |
| Conread position: | 146-366 |
| Cow position: | chr11:79661978-79662202 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 50 |
| Conread position: | 146-369 |
| Cow position: | chr11:17202279-17202056 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 146-380 |
| Cow position: | chr11:22069676-22069443 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 90, 37 |
| Conread position: | 147-353 |
| Cow position: | chr11:49413795-49414008 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 12 |
| Conread position: | 148-373 |
| Cow position: | chr11:61055616-61055391 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 88, 83 |
| Conread position: | 148-378 |
| Cow position: | chr11:16743032-16743268 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 148-378 |
| Cow position: | chr11:33628252-33628019 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 88 |
| Conread position: | 148-431 |
| Cow position: | chr11:39175753-39176033 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 19, 88 |
| Conread position: | 154-378 |
| Cow position: | chr11:35651273-35651052 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 162-377 |
| Cow position: | chr11:69294943-69294722 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 165-381 |
| Cow position: | chr11:35932796-35933011 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 168-367 |
| Cow position: | chr11:26081424-26081233 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 144, 12 |
| Conread position: | 176-382 |
| Cow position: | chr11:21646215-21646420 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 60, 97 |
| Conread position: | 204-381 |
| Cow position: | chr11:47872605-47872428 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 215-362 |
| Cow position: | chr11:43847340-43847194 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 215-458 |
| Cow position: | chr11:35919374-35919618 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 116 |
| Conread position: | 218-372 |
| Cow position: | chr11:59916785-59916632 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 220-361 |
| Cow position: | chr11:18492254-18492115 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 220-377 |
| Cow position: | chr11:39626724-39626879 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 220-381 |
| Cow position: | chr11:58909110-58908951 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 221-378 |
| Cow position: | chr11:37977923-37977763 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 221-382 |
| Cow position: | chr11:65703984-65704142 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 16 |
| Conread position: | 223-378 |
| Cow position: | chr11:27601747-27601895 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 224-377 |
| Cow position: | chr11:58836233-58836383 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 10, 57 |
| Conread position: | 234-387 |
| Cow position: | chr11:65442820-65442973 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 121, 56 |
| Conread position: | 234-399 |
| Cow position: | chr11:41159240-41159074 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 235-378 |
| Cow position: | chr11:52023395-52023540 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 250-369 |
| Cow position: | chr11:20836586-20836707 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 89, 35 |
| Conread position: | 250-377 |
| Cow position: | chr11:65117342-65117216 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 250-385 |
| Cow position: | chr11:7968502-7968369 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 131, 35 |
| Conread position: | 250-386 |
| Cow position: | chr11:44121206-44121340 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 254-373 |
| Cow position: | chr11:71255021-71255139 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 254-377 |
| Cow position: | chr11:50957052-50957173 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 260-377 |
| Cow position: | chr11:40735621-40735737 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 263-362 |
| Cow position: | chr11:16729782-16729683 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 82 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 271-377 |
| Cow position: | chr11:25371550-25371444 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.