Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 33-380 |
| Cow position: | chr12:4825308-4824959 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 19, 92 |
| Conread position: | 74-378 |
| Cow position: | chr12:10253265-10252953 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 71, 96 |
| Conread position: | 75-378 |
| Cow position: | chr12:8460935-8461248 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 77-362 |
| Cow position: | chr12:45100346-45100627 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 78-378 |
| Cow position: | chr12:36154794-36154479 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 68, 9 |
| Conread position: | 84-362 |
| Cow position: | chr12:10523206-10523496 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 193 |
| Conread position: | 86-362 |
| Cow position: | chr12:14541235-14540944 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 16, 117 |
| Conread position: | 86-378 |
| Cow position: | chr12:14316659-14316964 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 59, 116 |
| Conread position: | 87-345 |
| Cow position: | chr12:38179452-38179185 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 87-362 |
| Cow position: | chr12:26549142-26548857 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 106 |
| Conread position: | 87-373 |
| Cow position: | chr12:16925177-16925463 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 58, 11 |
| Conread position: | 87-378 |
| Cow position: | chr12:33257461-33257756 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 87-380 |
| Cow position: | chr12:33483797-33483493 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 87-381 |
| Cow position: | chr12:6393618-6393307 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 57, 256 |
| Conread position: | 87-381 |
| Cow position: | chr12:10402250-10402555 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 60, 49 |
| Conread position: | 87-382 |
| Cow position: | chr12:29473182-29473492 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 98 |
| Conread position: | 88-406 |
| Cow position: | chr12:27601337-27601666 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 60, 188 |
| Conread position: | 89-373 |
| Cow position: | chr12:25635222-25635507 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 90-374 |
| Cow position: | chr12:41700756-41700467 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 90-380 |
| Cow position: | chr12:9591831-9591538 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 132 |
| Conread position: | 93-354 |
| Cow position: | chr12:40706832-40706571 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 93-413 |
| Cow position: | chr12:24960896-24961234 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 95-378 |
| Cow position: | chr12:40291554-40291263 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 117-373 |
| Cow position: | chr12:40778871-40778604 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 30, 61 |
| Conread position: | 145-386 |
| Cow position: | chr12:16918520-16918760 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 148-361 |
| Cow position: | chr12:31526850-31527060 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 45 |
| Conread position: | 148-378 |
| Cow position: | chr12:5197064-5196833 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 148-384 |
| Cow position: | chr12:3992862-3993107 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 148-386 |
| Cow position: | chr12:23639798-23640044 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 51, 147 |
| Conread position: | 151-362 |
| Cow position: | chr12:15252329-15252544 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 160-355 |
| Cow position: | chr12:22962504-22962704 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 160-372 |
| Cow position: | chr12:26853160-26852949 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 161-347 |
| Cow position: | chr12:29475047-29475237 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 92 |
| Conread position: | 161-351 |
| Cow position: | chr12:37466415-37466614 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 135 |
| Conread position: | 168-362 |
| Cow position: | chr12:13811671-13811473 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 171-380 |
| Cow position: | chr12:17121376-17121175 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 182-379 |
| Cow position: | chr12:42402523-42402721 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 65, 110 |
| Conread position: | 184-376 |
| Cow position: | chr12:36333589-36333781 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 200-356 |
| Cow position: | chr12:25601421-25601268 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 207-368 |
| Cow position: | chr12:3758182-3758020 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 215-358 |
| Cow position: | chr12:7949335-7949193 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 16, 115 |
| Conread position: | 215-362 |
| Cow position: | chr12:36525548-36525403 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 215-380 |
| Cow position: | chr12:27485371-27485534 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 218-367 |
| Cow position: | chr12:39109650-39109796 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 224-378 |
| Cow position: | chr12:9206533-9206381 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 7, 41 |
| Conread position: | 224-388 |
| Cow position: | chr12:30097730-30097891 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 8, 55 |
| Conread position: | 228-357 |
| Cow position: | chr12:36474735-36474865 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 235-383 |
| Cow position: | chr12:22247606-22247460 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 265-383 |
| Cow position: | chr12:23846651-23846767 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 266-383 |
| Cow position: | chr12:13061036-13060922 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.