Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 31-366 |
| Cow position: | chr13:15870133-15869774 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 58-378 |
| Cow position: | chr13:7236218-7235891 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 87, 11 |
| Conread position: | 76-358 |
| Cow position: | chr13:15983909-15984198 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 71, 129 |
| Conread position: | 83-342 |
| Cow position: | chr13:47567540-47567272 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 5 |
| Conread position: | 87-318 |
| Cow position: | chr13:15638479-15638238 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 87-330 |
| Cow position: | chr13:58727783-58728028 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 87-341 |
| Cow position: | chr13:17564764-17564498 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 87-365 |
| Cow position: | chr13:26171539-26171812 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 87-368 |
| Cow position: | chr13:33837380-33837660 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 86 |
| Conread position: | 87-372 |
| Cow position: | chr13:46496810-46496520 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 113 |
| Conread position: | 87-378 |
| Cow position: | chr13:3176332-3176637 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 87-378 |
| Cow position: | chr13:29192141-29192439 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 110 |
| Conread position: | 87-382 |
| Cow position: | chr13:15720514-15720821 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 88-354 |
| Cow position: | chr13:945108-945370 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 120 |
| Conread position: | 88-355 |
| Cow position: | chr13:16963153-16962891 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 59, 153 |
| Conread position: | 88-378 |
| Cow position: | chr13:39008316-39008602 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 88-379 |
| Cow position: | chr13:15389655-15389373 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 89-333 |
| Cow position: | chr13:8676172-8675917 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 89-347 |
| Cow position: | chr13:6435930-6435664 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 58, 27 |
| Conread position: | 89-368 |
| Cow position: | chr13:16964287-16964581 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 89-372 |
| Cow position: | chr13:17535418-17535701 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 58, 112 |
| Conread position: | 89-372 |
| Cow position: | chr13:18310221-18310514 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 17 |
| Conread position: | 89-381 |
| Cow position: | chr13:14739246-14739546 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 60, 182 |
| Conread position: | 90-358 |
| Cow position: | chr13:12993445-12993724 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 33, 23 |
| Conread position: | 90-368 |
| Cow position: | chr13:46256598-46256889 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 59, 240 |
| Conread position: | 90-377 |
| Cow position: | chr13:15812268-15811969 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 57, 30 |
| Conread position: | 92-361 |
| Cow position: | chr13:17791651-17791923 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 111 |
| Conread position: | 95-339 |
| Cow position: | chr13:35723539-35723290 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 98-394 |
| Cow position: | chr13:48352576-48352880 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 49, 13 |
| Conread position: | 99-352 |
| Cow position: | chr13:17942768-17942507 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 239 |
| Conread position: | 100-381 |
| Cow position: | chr13:38992463-38992179 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 111-372 |
| Cow position: | chr13:8958398-8958654 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 10 |
| Conread position: | 121-377 |
| Cow position: | chr13:3381757-3381491 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 27, 218 |
| Conread position: | 148-339 |
| Cow position: | chr13:28799282-28799479 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 149 |
| Conread position: | 148-362 |
| Cow position: | chr13:5969190-5968970 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 187 |
| Conread position: | 148-362 |
| Cow position: | chr13:11980139-11980356 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 148-378 |
| Cow position: | chr13:57390119-57389882 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 152-379 |
| Cow position: | chr13:18519384-18519166 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 195, 40 |
| Conread position: | 157-393 |
| Cow position: | chr13:37626688-37626928 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 161-325 |
| Cow position: | chr13:12190761-12190932 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 169-352 |
| Cow position: | chr13:15988517-15988337 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 170-374 |
| Cow position: | chr13:28086614-28086408 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 58 |
| Conread position: | 203-362 |
| Cow position: | chr13:54400577-54400733 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 215-334 |
| Cow position: | chr13:21187631-21187749 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 215-351 |
| Cow position: | chr13:19478910-19479044 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 215-357 |
| Cow position: | chr13:59214985-59215126 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 222-348 |
| Cow position: | chr13:55322064-55321939 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 223-371 |
| Cow position: | chr13:40974644-40974791 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 242-377 |
| Cow position: | chr13:33625519-33625384 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 113, 21 |
Show alignments to all cow chromosomes.