Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 44-365 |
| Cow position: | chr15:50482175-50482510 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 159 |
| Conread position: | 52-301 |
| Cow position: | chr15:3603812-3603540 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 40, 257 |
| Conread position: | 62-354 |
| Cow position: | chr15:22231794-22232096 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 15, 150 |
| Conread position: | 70-365 |
| Cow position: | chr15:18448915-18448619 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 75-381 |
| Cow position: | chr15:22132005-22131692 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 76-347 |
| Cow position: | chr15:18017340-18017620 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 71, 48 |
| Conread position: | 76-362 |
| Cow position: | chr15:37424828-37425112 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 77-373 |
| Cow position: | chr15:11684354-11684647 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 79-348 |
| Cow position: | chr15:15397558-15397824 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 105 |
| Conread position: | 80-391 |
| Cow position: | chr15:46838543-46838864 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 123 |
| Conread position: | 86-337 |
| Cow position: | chr15:28052569-28052322 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 58, 25 |
| Conread position: | 87-357 |
| Cow position: | chr15:1577699-1577418 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 51, 120 |
| Conread position: | 87-380 |
| Cow position: | chr15:30196208-30195920 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 137, 59 |
| Conread position: | 87-383 |
| Cow position: | chr15:14107861-14108172 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 87-405 |
| Cow position: | chr15:1858699-1858384 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 26, 135 |
| Conread position: | 88-322 |
| Cow position: | chr15:10496535-10496302 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 137 |
| Conread position: | 88-358 |
| Cow position: | chr15:30194576-30194311 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 147, 56 |
| Conread position: | 88-366 |
| Cow position: | chr15:5650327-5650621 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 129 |
| Conread position: | 88-368 |
| Cow position: | chr15:10823628-10823906 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 88-386 |
| Cow position: | chr15:12776750-12777061 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 88-389 |
| Cow position: | chr15:44672526-44672203 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 89-367 |
| Cow position: | chr15:43842952-43842672 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 113 |
| Conread position: | 89-380 |
| Cow position: | chr15:21856120-21855823 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 90-381 |
| Cow position: | chr15:46051975-46051684 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 92-376 |
| Cow position: | chr15:41963969-41964253 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 21 |
| Conread position: | 93-380 |
| Cow position: | chr15:38089312-38089603 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 54, 29 |
| Conread position: | 98-337 |
| Cow position: | chr15:22913461-22913696 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 98-378 |
| Cow position: | chr15:38022161-38021867 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 103-365 |
| Cow position: | chr15:6995021-6994747 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 112-382 |
| Cow position: | chr15:22216939-22217209 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 35, 140 |
| Conread position: | 126-379 |
| Cow position: | chr15:30262740-30263011 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 21, 177 |
| Conread position: | 139-372 |
| Cow position: | chr15:37063516-37063756 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 59, 141 |
| Conread position: | 148-372 |
| Cow position: | chr15:25426687-25426467 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 148-377 |
| Cow position: | chr15:42382276-42382512 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 148-382 |
| Cow position: | chr15:23294813-23294564 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 148-383 |
| Cow position: | chr15:41959761-41959996 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 148-383 |
| Cow position: | chr15:51908836-51909075 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 82, 49 |
| Conread position: | 161-378 |
| Cow position: | chr15:48592092-48591874 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 133 |
| Conread position: | 165-372 |
| Cow position: | chr15:37259065-37258858 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 168-376 |
| Cow position: | chr15:8266848-8267054 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 201-391 |
| Cow position: | chr15:40545064-40544874 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 215-345 |
| Cow position: | chr15:51836793-51836665 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 215-372 |
| Cow position: | chr15:39996699-39996546 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 224-367 |
| Cow position: | chr15:16716059-16716201 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 34 |
| Conread position: | 232-378 |
| Cow position: | chr15:28967656-28967509 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 235-384 |
| Cow position: | chr15:48065848-48065700 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 237-367 |
| Cow position: | chr15:27020176-27020047 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 91 |
| Conread position: | 250-372 |
| Cow position: | chr15:28051048-28050929 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 250-397 |
| Cow position: | chr15:4164953-4165102 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 254-368 |
| Cow position: | chr15:22132294-22132182 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 263-376 |
| Cow position: | chr15:41920617-41920729 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 268-396 |
| Cow position: | chr15:38554083-38554210 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 123, 61 |
| Conread position: | 275-378 |
| Cow position: | chr15:26952589-26952692 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 41, 11 |
Show alignments to all cow chromosomes.