Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 50-362 |
| Cow position: | chr17:15738400-15738716 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 35, 49 |
| Conread position: | 76-378 |
| Cow position: | chr17:26062010-26062327 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 70, 127 |
| Conread position: | 84-378 |
| Cow position: | chr17:40712351-40712631 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 118, 14 |
| Conread position: | 84-380 |
| Cow position: | chr17:2526090-2526397 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 6, 12 |
| Conread position: | 87-342 |
| Cow position: | chr17:13075662-13075397 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 60, 99 |
| Conread position: | 87-354 |
| Cow position: | chr17:25358129-25358401 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 87-354 |
| Cow position: | chr17:28116199-28115923 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 87-378 |
| Cow position: | chr17:7819808-7819510 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 66, 115 |
| Conread position: | 87-383 |
| Cow position: | chr17:19091575-19091886 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 64, 84 |
| Conread position: | 88-370 |
| Cow position: | chr17:37399639-37399349 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 59, 103 |
| Conread position: | 89-366 |
| Cow position: | chr17:9956767-9957046 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 118, 37 |
| Conread position: | 89-372 |
| Cow position: | chr17:28586591-28586293 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 54, 31 |
| Conread position: | 89-378 |
| Cow position: | chr17:12789256-12788978 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 93, 49 |
| Conread position: | 89-378 |
| Cow position: | chr17:43454364-43454063 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 57, 232 |
| Conread position: | 92-376 |
| Cow position: | chr17:13411674-13411955 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 92-398 |
| Cow position: | chr17:19530614-19530292 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 53, 174 |
| Conread position: | 98-358 |
| Cow position: | chr17:23429863-23429597 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 199 |
| Conread position: | 103-366 |
| Cow position: | chr17:27331996-27331735 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 153 |
| Conread position: | 110-378 |
| Cow position: | chr17:17256345-17256612 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 37, 60 |
| Conread position: | 124-379 |
| Cow position: | chr17:16405629-16405368 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 148-376 |
| Cow position: | chr17:4698950-4698729 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 107, 28 |
| Conread position: | 148-376 |
| Cow position: | chr17:30251758-30251522 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 148-381 |
| Cow position: | chr17:30002203-30002444 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 150-354 |
| Cow position: | chr17:3428003-3427807 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 160-378 |
| Cow position: | chr17:25916265-25916500 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 161-378 |
| Cow position: | chr17:10299063-10298853 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 162-380 |
| Cow position: | chr17:14826334-14826109 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 136 |
| Conread position: | 169-373 |
| Cow position: | chr17:27725578-27725777 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 218-403 |
| Cow position: | chr17:3823851-3823666 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 31 |
| Conread position: | 220-352 |
| Cow position: | chr17:18400141-18400010 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 220-365 |
| Cow position: | chr17:32344959-32344815 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 78 |
| Conread position: | 221-389 |
| Cow position: | chr17:21337687-21337852 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 228-380 |
| Cow position: | chr17:32169156-32169008 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 229-369 |
| Cow position: | chr17:1577811-1577674 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 234-358 |
| Cow position: | chr17:20998487-20998363 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-378 |
| Cow position: | chr17:20278626-20278487 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 72, 51 |
| Conread position: | 250-383 |
| Cow position: | chr17:19533196-19533328 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 61, 34 |
| Conread position: | 254-369 |
| Cow position: | chr17:19201179-19201065 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.