Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 50-354 |
| Cow position: | chr18:25843508-25843200 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 29, 67 |
| Conread position: | 50-362 |
| Cow position: | chr18:18945195-18944879 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 119 |
| Conread position: | 70-368 |
| Cow position: | chr18:34807948-34807643 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 73, 100 |
| Conread position: | 76-378 |
| Cow position: | chr18:29829664-29829348 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 226 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 43, 109 |
| Conread position: | 77-378 |
| Cow position: | chr18:20907656-20907971 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 81-378 |
| Cow position: | chr18:50034906-50034613 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 51, 125 |
| Conread position: | 87-340 |
| Cow position: | chr18:32741189-32740931 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 87-358 |
| Cow position: | chr18:40669016-40669297 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 87-359 |
| Cow position: | chr18:31617699-31617416 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 40 |
| Conread position: | 87-362 |
| Cow position: | chr18:28959651-28959367 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 103 |
| Conread position: | 87-378 |
| Cow position: | chr18:36853122-36852815 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 88-362 |
| Cow position: | chr18:35698983-35698696 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 55, 114 |
| Conread position: | 88-370 |
| Cow position: | chr18:34598268-34598563 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 38, 87 |
| Conread position: | 88-372 |
| Cow position: | chr18:8276229-8276519 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 59, 121 |
| Conread position: | 88-378 |
| Cow position: | chr18:32647020-32646722 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 88-378 |
| Cow position: | chr18:37526900-37526598 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 59, 197 |
| Conread position: | 88-386 |
| Cow position: | chr18:5194314-5194620 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 89-364 |
| Cow position: | chr18:19119325-19119591 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 89-378 |
| Cow position: | chr18:29664529-29664234 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 67, 183 |
| Conread position: | 89-380 |
| Cow position: | chr18:6841096-6841373 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 166, 30 |
| Conread position: | 89-381 |
| Cow position: | chr18:20076585-20076296 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 51, 63 |
| Conread position: | 90-330 |
| Cow position: | chr18:33203784-33204034 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 57, 112 |
| Conread position: | 90-368 |
| Cow position: | chr18:47649588-47649869 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 57, 160 |
| Conread position: | 90-380 |
| Cow position: | chr18:16510110-16510403 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 146 |
| Conread position: | 90-380 |
| Cow position: | chr18:18027616-18027917 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 34, 21 |
| Conread position: | 91-347 |
| Cow position: | chr18:21539861-21539601 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 44, 79 |
| Conread position: | 92-361 |
| Cow position: | chr18:42777524-42777806 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 93-414 |
| Cow position: | chr18:18479030-18479362 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 72, 108 |
| Conread position: | 98-358 |
| Cow position: | chr18:35748742-35748470 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 161 |
| Conread position: | 105-379 |
| Cow position: | chr18:4746625-4746909 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 97 |
| Conread position: | 111-368 |
| Cow position: | chr18:24059250-24058995 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 113-354 |
| Cow position: | chr18:936801-936547 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 69 |
| Conread position: | 114-368 |
| Cow position: | chr18:32661856-32662117 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 31, 86 |
| Conread position: | 148-355 |
| Cow position: | chr18:49007721-49007511 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 21 |
| Conread position: | 148-361 |
| Cow position: | chr18:1505733-1505524 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 148-368 |
| Cow position: | chr18:47278346-47278137 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 148-378 |
| Cow position: | chr18:17137773-17137991 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 142, 48 |
| Conread position: | 148-378 |
| Cow position: | chr18:26453223-26452985 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 148-381 |
| Cow position: | chr18:38463545-38463307 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 148-384 |
| Cow position: | chr18:32936495-32936256 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 23 |
| Conread position: | 150-369 |
| Cow position: | chr18:51154800-51155019 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 150-378 |
| Cow position: | chr18:29516673-29516904 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 75, 59 |
| Conread position: | 151-343 |
| Cow position: | chr18:28665097-28664902 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 33, 143 |
| Conread position: | 157-381 |
| Cow position: | chr18:934356-934137 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 157-394 |
| Cow position: | chr18:53011977-53012201 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 162-368 |
| Cow position: | chr18:1006859-1007050 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 162-378 |
| Cow position: | chr18:15223156-15223376 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 12 |
| Conread position: | 164-378 |
| Cow position: | chr18:29086543-29086763 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 168-382 |
| Cow position: | chr18:54690701-54690911 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 76, 18 |
| Conread position: | 169-378 |
| Cow position: | chr18:45976616-45976821 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 204-362 |
| Cow position: | chr18:32636294-32636135 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 134, 84 |
| Conread position: | 220-378 |
| Cow position: | chr18:25964163-25964320 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 224-387 |
| Cow position: | chr18:6746670-6746831 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 234-381 |
| Cow position: | chr18:41794081-41794228 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-362 |
| Cow position: | chr18:31265149-31265037 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 250-381 |
| Cow position: | chr18:17220541-17220410 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 250-381 |
| Cow position: | chr18:17235189-17235058 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 66 |
| Conread position: | 252-362 |
| Cow position: | chr18:28844762-28844871 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 254-382 |
| Cow position: | chr18:35530412-35530285 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.