Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 45-370 |
| Cow position: | chr2:755663-755993 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 42, 52 |
| Conread position: | 47-368 |
| Cow position: | chr2:9723926-9724237 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 60 |
| Conread position: | 50-362 |
| Cow position: | chr2:34493933-34494244 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 35, 140 |
| Conread position: | 50-362 |
| Cow position: | chr2:47401065-47401373 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 76-379 |
| Cow position: | chr2:5515972-5516282 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 134 |
| Conread position: | 76-383 |
| Cow position: | chr2:4770183-4770495 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 77-385 |
| Cow position: | chr2:73303770-73304096 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 68, 53 |
| Conread position: | 84-370 |
| Cow position: | chr2:64510802-64510504 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 61, 179 |
| Conread position: | 87-330 |
| Cow position: | chr2:32196119-32195865 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 60, 127 |
| Conread position: | 87-368 |
| Cow position: | chr2:1648949-1649240 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 52 |
| Conread position: | 87-370 |
| Cow position: | chr2:67942931-67943218 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 98 |
| Conread position: | 87-372 |
| Cow position: | chr2:11302830-11303125 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 62, 33 |
| Conread position: | 87-377 |
| Cow position: | chr2:18143882-18143574 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 87-378 |
| Cow position: | chr2:74376261-74375957 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 60, 89 |
| Conread position: | 87-388 |
| Cow position: | chr2:80968055-80967763 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 87-389 |
| Cow position: | chr2:54068863-54069165 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 87-389 |
| Cow position: | chr2:67491743-67491436 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 60, 109 |
| Conread position: | 88-348 |
| Cow position: | chr2:34918732-34918462 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 59, 106 |
| Conread position: | 88-362 |
| Cow position: | chr2:58205133-58204846 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 57, 21 |
| Conread position: | 88-367 |
| Cow position: | chr2:38283124-38282839 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 89-362 |
| Cow position: | chr2:84761892-84762176 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 89-366 |
| Cow position: | chr2:12833083-12832809 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 58, 41 |
| Conread position: | 89-370 |
| Cow position: | chr2:55068063-55067779 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 126 |
| Conread position: | 89-378 |
| Cow position: | chr2:75021216-75020923 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 58, 124 |
| Conread position: | 90-367 |
| Cow position: | chr2:79586558-79586266 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 31, 83 |
| Conread position: | 90-371 |
| Cow position: | chr2:55301190-55301478 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 55, 99 |
| Conread position: | 92-359 |
| Cow position: | chr2:64901824-64902097 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 94-383 |
| Cow position: | chr2:75923936-75924230 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 107, 45 |
| Conread position: | 110-378 |
| Cow position: | chr2:33193323-33193603 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 89 |
| Conread position: | 112-372 |
| Cow position: | chr2:37125898-37125627 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 33, 70 |
| Conread position: | 114-372 |
| Cow position: | chr2:84535158-84534892 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 33, 120 |
| Conread position: | 114-383 |
| Cow position: | chr2:13176420-13176695 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 154 |
| Conread position: | 120-389 |
| Cow position: | chr2:60007846-60007562 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 182 |
| Conread position: | 142-378 |
| Cow position: | chr2:62716737-62716497 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 148-354 |
| Cow position: | chr2:20269895-20270102 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 148-367 |
| Cow position: | chr2:32342508-32342734 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 148-376 |
| Cow position: | chr2:20542184-20542413 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 52, 112 |
| Conread position: | 148-382 |
| Cow position: | chr2:16639196-16638957 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 149-383 |
| Cow position: | chr2:10461884-10461645 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 80, 148 |
| Conread position: | 150-382 |
| Cow position: | chr2:26770901-26770668 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 162-345 |
| Cow position: | chr2:77697707-77697890 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 32 |
| Conread position: | 164-378 |
| Cow position: | chr2:14016159-14016369 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 80 |
| Conread position: | 172-388 |
| Cow position: | chr2:78091330-78091111 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 180-378 |
| Cow position: | chr2:15739979-15740166 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 215-354 |
| Cow position: | chr2:59803601-59803737 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 215-378 |
| Cow position: | chr2:64078364-64078202 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 113 |
| Conread position: | 215-381 |
| Cow position: | chr2:9763617-9763451 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 32, 72 |
| Conread position: | 216-366 |
| Cow position: | chr2:4214035-4213886 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 221-378 |
| Cow position: | chr2:2911943-2911786 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 137, 69 |
| Conread position: | 222-379 |
| Cow position: | chr2:14111279-14111131 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 229-398 |
| Cow position: | chr2:4817725-4817893 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 44, 62 |
| Conread position: | 232-378 |
| Cow position: | chr2:35732342-35732488 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 118, 52 |
| Conread position: | 236-379 |
| Cow position: | chr2:27055172-27055029 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 93 |
| Conread position: | 237-367 |
| Cow position: | chr2:33496895-33496766 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 254-417 |
| Cow position: | chr2:85517930-85518086 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 276-383 |
| Cow position: | chr2:74518698-74518590 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 0 |
Show alignments to all cow chromosomes.