Cow genome map

Conread name: Ss1.1-Pig3-SRG8006P11.3

Conread position: 50-380
Cow position: chr20:37458393-37458746 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 239
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 35, 164

Conread position: 50-383
Cow position: chr20:27479359-27479024 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 241
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 35, 47

Conread position: 80-386
Cow position: chr20:27352127-27352447 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 216
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 58

Conread position: 84-384
Cow position: chr20:23281863-23282164 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 213
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 61, 98

Conread position: 87-336
Cow position: chr20:18110982-18110723 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 180
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 44, 63

Conread position: 87-354
Cow position: chr20:29966148-29965878 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 95

Conread position: 87-380
Cow position: chr20:17637702-17637390 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 261

Conread position: 87-381
Cow position: chr20:22229555-22229247 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 199
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 59, 115

Conread position: 88-347
Cow position: chr20:33810000-33809730 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 25

Conread position: 88-372
Cow position: chr20:1274856-1274573 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 198
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 113, 51

Conread position: 88-376
Cow position: chr20:27241077-27240797 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 196
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 14

Conread position: 88-378
Cow position: chr20:34946890-34946607 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 58, 30

Conread position: 89-368
Cow position: chr20:41908749-41909036 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 190
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 69

Conread position: 89-378
Cow position: chr20:10378869-10379156 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 22, 117

Conread position: 90-359
Cow position: chr20:33222145-33222414 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 33, 113

Conread position: 90-362
Cow position: chr20:12838203-12838473 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 188
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 126, 58

Conread position: 90-379
Cow position: chr20:35837381-35837662 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 30, 118

Conread position: 90-395
Cow position: chr20:8264707-8265016 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 55, 80

Conread position: 91-352
Cow position: chr20:10585786-10585516 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 86

Conread position: 91-378
Cow position: chr20:32873325-32873040 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 56, 18

Conread position: 92-352
Cow position: chr20:33344120-33344394 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 19, 113

Conread position: 92-393
Cow position: chr20:17557104-17556810 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 199
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 21, 32

Conread position: 93-361
Cow position: chr20:5805804-5805531 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 203
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 54, 18

Conread position: 93-378
Cow position: chr20:3345616-3345341 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 70, 0

Conread position: 97-368
Cow position: chr20:14408117-14408397 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 180

Conread position: 98-378
Cow position: chr20:3800466-3800758 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 30, 107

Conread position: 111-358
Cow position: chr20:5085442-5085698 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 35, 15

Conread position: 118-376
Cow position: chr20:18555734-18556005 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 29, 85

Conread position: 120-380
Cow position: chr20:13156250-13155984 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 188
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 27, 177

Conread position: 122-380
Cow position: chr20:13156292-13156561 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 186
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 25, 57

Conread position: 148-333
Cow position: chr20:36399690-36399873 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 0

Conread position: 148-368
Cow position: chr20:38031710-38031491 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 154
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 159, 0

Conread position: 148-378
Cow position: chr20:35237727-35237950 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 90, 48

Conread position: 148-383
Cow position: chr20:28521820-28521587 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 64, 16

Conread position: 150-380
Cow position: chr20:9216125-9215902 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 161
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 46, 0

Conread position: 151-378
Cow position: chr20:21428710-21428931 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 58, 45

Conread position: 162-367
Cow position: chr20:37442077-37441875 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 34

Conread position: 167-479
Cow position: chr20:9217317-9217014 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 210
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 41, 33

Conread position: 204-372
Cow position: chr20:30022826-30022661 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 20

Conread position: 214-379
Cow position: chr20:13187867-13187700 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 128
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 52

Conread position: 215-380
Cow position: chr20:14862417-14862575 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 20, 48

Conread position: 216-380
Cow position: chr20:35218230-35218072 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 135, 29

Conread position: 216-385
Cow position: chr20:14122905-14122733 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 66, 113

Conread position: 220-362
Cow position: chr20:20377961-20378103 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 19, 67

Conread position: 224-378
Cow position: chr20:2696169-2696016 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 35

Conread position: 246-390
Cow position: chr20:27943871-27944016 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 139, 0

Show alignments to all cow chromosomes.