Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 50-378 |
| Cow position: | chr21:33375165-33374822 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 97, 24 |
| Conread position: | 62-378 |
| Cow position: | chr21:4511109-4510786 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 120 |
| Conread position: | 76-352 |
| Cow position: | chr21:37175753-37175464 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 111 |
| Conread position: | 80-370 |
| Cow position: | chr21:38743811-38744112 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 65, 102 |
| Conread position: | 83-352 |
| Cow position: | chr21:14506863-14507143 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 87-362 |
| Cow position: | chr21:14571859-14571584 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 138 |
| Conread position: | 87-378 |
| Cow position: | chr21:24161680-24161977 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 53, 206 |
| Conread position: | 87-386 |
| Cow position: | chr21:40886976-40886682 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 59, 89 |
| Conread position: | 88-358 |
| Cow position: | chr21:37559602-37559323 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 59, 166 |
| Conread position: | 88-361 |
| Cow position: | chr21:36924171-36924447 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 95 |
| Conread position: | 88-368 |
| Cow position: | chr21:47198601-47198320 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 57, 7 |
| Conread position: | 88-378 |
| Cow position: | chr21:13507946-13508220 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 10 |
| Conread position: | 88-378 |
| Cow position: | chr21:15947603-15947884 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 90-354 |
| Cow position: | chr21:25358477-25358204 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 84 |
| Conread position: | 90-378 |
| Cow position: | chr21:30880439-30880136 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 91-330 |
| Cow position: | chr21:33606373-33606122 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 201 |
| Conread position: | 92-342 |
| Cow position: | chr21:43964971-43964708 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 85 |
| Conread position: | 93-361 |
| Cow position: | chr21:33718031-33717767 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 56, 158 |
| Conread position: | 98-359 |
| Cow position: | chr21:37011765-37011496 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 6 |
| Conread position: | 98-378 |
| Cow position: | chr21:28055682-28055977 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 98-378 |
| Cow position: | chr21:28729004-28729302 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 111-380 |
| Cow position: | chr21:38463501-38463767 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 122 |
| Conread position: | 118-362 |
| Cow position: | chr21:42045061-42044811 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 179 |
| Conread position: | 146-380 |
| Cow position: | chr21:5182557-5182333 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 25, 7 |
| Conread position: | 148-343 |
| Cow position: | chr21:15267370-15267569 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 19, 71 |
| Conread position: | 148-376 |
| Cow position: | chr21:41040396-41040162 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 77, 16 |
| Conread position: | 150-362 |
| Cow position: | chr21:26530822-26530603 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 157-339 |
| Cow position: | chr21:9451949-9452136 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 161-378 |
| Cow position: | chr21:2728194-2727993 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 162-338 |
| Cow position: | chr21:13416507-13416688 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 10 |
| Conread position: | 162-373 |
| Cow position: | chr21:19021321-19021118 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 167-366 |
| Cow position: | chr21:41148543-41148350 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 149, 36 |
| Conread position: | 215-373 |
| Cow position: | chr21:19690434-19690590 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 94, 70 |
| Conread position: | 225-362 |
| Cow position: | chr21:23621101-23621237 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 234-372 |
| Cow position: | chr21:32865845-32865711 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 235-383 |
| Cow position: | chr21:29471246-29471388 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 252-357 |
| Cow position: | chr21:36805715-36805614 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 264-378 |
| Cow position: | chr21:15692530-15692418 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.