Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 62-377 |
| Cow position: | chr25:16905331-16905004 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 32, 58 |
| Conread position: | 73-362 |
| Cow position: | chr25:11594069-11593774 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 79-348 |
| Cow position: | chr25:12647129-12646851 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 68, 123 |
| Conread position: | 80-327 |
| Cow position: | chr25:6005513-6005271 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 33 |
| Conread position: | 80-352 |
| Cow position: | chr25:3977485-3977739 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 9, 42 |
| Conread position: | 84-378 |
| Cow position: | chr25:21548623-21548334 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 118 |
| Conread position: | 86-378 |
| Cow position: | chr25:24731100-24731404 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 42, 276 |
| Conread position: | 87-266 |
| Cow position: | chr25:16910491-16910304 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 58, 137 |
| Conread position: | 87-346 |
| Cow position: | chr25:5195553-5195812 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 157 |
| Conread position: | 87-362 |
| Cow position: | chr25:11575808-11576083 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 207 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 60, 157 |
| Conread position: | 87-370 |
| Cow position: | chr25:11348179-11348472 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 9 |
| Conread position: | 87-378 |
| Cow position: | chr25:14508608-14508304 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 87-380 |
| Cow position: | chr25:11575048-11574748 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 88-328 |
| Cow position: | chr25:15734288-15734037 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 57, 113 |
| Conread position: | 88-342 |
| Cow position: | chr25:15315269-15315008 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 88-373 |
| Cow position: | chr25:26049065-26048780 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 41, 99 |
| Conread position: | 88-377 |
| Cow position: | chr25:15270743-15271046 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 35, 21 |
| Conread position: | 88-379 |
| Cow position: | chr25:28598799-28598500 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 59, 249 |
| Conread position: | 88-381 |
| Cow position: | chr25:8527241-8527554 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 59, 260 |
| Conread position: | 88-383 |
| Cow position: | chr25:15236208-15236508 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 89-362 |
| Cow position: | chr25:11177734-11177457 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 89-378 |
| Cow position: | chr25:18919647-18919354 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 90-368 |
| Cow position: | chr25:32045471-32045196 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 46 |
| Conread position: | 112-364 |
| Cow position: | chr25:13699200-13698939 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 97 |
| Conread position: | 112-380 |
| Cow position: | chr25:11901842-11901557 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 35, 83 |
| Conread position: | 112-388 |
| Cow position: | chr25:20252112-20251840 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 35, 54 |
| Conread position: | 124-400 |
| Cow position: | chr25:7301863-7302144 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 184 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 23, 108 |
| Conread position: | 146-367 |
| Cow position: | chr25:5130343-5130573 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 62 |
| Conread position: | 148-374 |
| Cow position: | chr25:27436221-27435987 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 152 |
| Conread position: | 148-376 |
| Cow position: | chr25:2393932-2393701 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 157-354 |
| Cow position: | chr25:12169312-12169513 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 68, 158 |
| Conread position: | 157-379 |
| Cow position: | chr25:26969880-26969661 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 162-383 |
| Cow position: | chr25:15424327-15424099 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 166-358 |
| Cow position: | chr25:8420695-8420495 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 133 |
| Conread position: | 206-344 |
| Cow position: | chr25:16905490-16905346 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 34, 23 |
| Conread position: | 208-381 |
| Cow position: | chr25:17527587-17527415 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 78 |
| Conread position: | 231-362 |
| Cow position: | chr25:3967762-3967632 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 24, 35 |
| Conread position: | 234-416 |
| Cow position: | chr25:36360923-36361105 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 116, 93 |
| Conread position: | 235-387 |
| Cow position: | chr25:22131746-22131895 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 236-377 |
| Cow position: | chr25:26474129-26474273 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 254-392 |
| Cow position: | chr25:6751937-6752074 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.