Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 77-368 |
| Cow position: | chr28:34632936-34632651 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 87-329 |
| Cow position: | chr28:29872140-29871897 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 87-354 |
| Cow position: | chr28:3183175-3183449 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 60, 130 |
| Conread position: | 87-380 |
| Cow position: | chr28:19140839-19140540 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 147 |
| Conread position: | 88-336 |
| Cow position: | chr28:16995970-16995709 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 88-346 |
| Cow position: | chr28:16221017-16221276 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 106, 23 |
| Conread position: | 88-380 |
| Cow position: | chr28:6227862-6227554 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 14, 220 |
| Conread position: | 89-368 |
| Cow position: | chr28:30970447-30970733 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 89-368 |
| Cow position: | chr28:30984379-30984665 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 50, 111 |
| Conread position: | 89-400 |
| Cow position: | chr28:3669134-3669453 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 90-373 |
| Cow position: | chr28:14672202-14671918 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 90-378 |
| Cow position: | chr28:11406459-11406162 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 59, 44 |
| Conread position: | 91-328 |
| Cow position: | chr28:26047897-26047651 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 116 |
| Conread position: | 98-381 |
| Cow position: | chr28:1832169-1831881 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 30, 23 |
| Conread position: | 100-383 |
| Cow position: | chr28:19353525-19353252 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 105-402 |
| Cow position: | chr28:22413255-22412948 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 48, 111 |
| Conread position: | 111-400 |
| Cow position: | chr28:18589392-18589691 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 112-378 |
| Cow position: | chr28:11481924-11481646 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 68 |
| Conread position: | 148-362 |
| Cow position: | chr28:28196163-28196382 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 125 |
| Conread position: | 148-369 |
| Cow position: | chr28:29310294-29310523 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 166 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 148-373 |
| Cow position: | chr28:18455630-18455403 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 149-391 |
| Cow position: | chr28:25522-25286 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 165-376 |
| Cow position: | chr28:4287978-4288188 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 11, 37 |
| Conread position: | 165-380 |
| Cow position: | chr28:2866228-2866005 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 168-380 |
| Cow position: | chr28:34202495-34202707 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 193-405 |
| Cow position: | chr28:34515547-34515758 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 217-358 |
| Cow position: | chr28:25500578-25500438 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 220-362 |
| Cow position: | chr28:15200341-15200199 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 225-385 |
| Cow position: | chr28:13284383-13284227 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 6, 40 |
| Conread position: | 229-376 |
| Cow position: | chr28:21038426-21038572 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 99 |
| Conread position: | 230-380 |
| Cow position: | chr28:5856852-5856705 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
Show alignments to all cow chromosomes.