Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 46-340 |
| Cow position: | chr3:23972055-23971757 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 36, 128 |
| Conread position: | 50-372 |
| Cow position: | chr3:44935194-44934878 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 50-380 |
| Cow position: | chr3:15712351-15712012 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 61-378 |
| Cow position: | chr3:1320453-1320772 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 75-358 |
| Cow position: | chr3:40293393-40293097 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 76-379 |
| Cow position: | chr3:81712201-81711900 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 71, 11 |
| Conread position: | 76-380 |
| Cow position: | chr3:288304-288002 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 77-392 |
| Cow position: | chr3:27442127-27441798 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 245 |
| Conread position: | 80-378 |
| Cow position: | chr3:69466934-69466631 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 67, 213 |
| Conread position: | 87-345 |
| Cow position: | chr3:73944880-73944617 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 31, 116 |
| Conread position: | 87-358 |
| Cow position: | chr3:48836680-48836961 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 87-362 |
| Cow position: | chr3:48829409-48829124 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 87-380 |
| Cow position: | chr3:11970819-11971110 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 116 |
| Conread position: | 87-383 |
| Cow position: | chr3:7301676-7301994 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 58, 198 |
| Conread position: | 87-385 |
| Cow position: | chr3:34838785-34838482 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 112 |
| Conread position: | 87-386 |
| Cow position: | chr3:32875713-32875404 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 65, 38 |
| Conread position: | 87-390 |
| Cow position: | chr3:79051364-79051662 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 298, 117 |
| Conread position: | 87-399 |
| Cow position: | chr3:30339267-30339596 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 59, 192 |
| Conread position: | 88-352 |
| Cow position: | chr3:24226360-24226108 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 38 |
| Conread position: | 88-362 |
| Cow position: | chr3:38776883-38776601 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 88-368 |
| Cow position: | chr3:26820035-26820317 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 57, 28 |
| Conread position: | 88-376 |
| Cow position: | chr3:20840335-20840062 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 144, 33 |
| Conread position: | 88-378 |
| Cow position: | chr3:6678920-6678628 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 105, 60 |
| Conread position: | 88-378 |
| Cow position: | chr3:36061276-36061575 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 59, 114 |
| Conread position: | 89-342 |
| Cow position: | chr3:66925508-66925251 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 113 |
| Conread position: | 89-362 |
| Cow position: | chr3:49232464-49232739 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 89-362 |
| Cow position: | chr3:52476061-52476329 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 57, 108 |
| Conread position: | 89-365 |
| Cow position: | chr3:72048344-72048611 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 89-378 |
| Cow position: | chr3:56503286-56502991 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 114 |
| Conread position: | 89-380 |
| Cow position: | chr3:48816626-48816327 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 33 |
| Conread position: | 89-380 |
| Cow position: | chr3:65744693-65744388 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 23, 256 |
| Conread position: | 91-378 |
| Cow position: | chr3:55542622-55542330 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 28 |
| Conread position: | 92-382 |
| Cow position: | chr3:3533289-3533576 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 93-400 |
| Cow position: | chr3:31095685-31095361 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 17, 82 |
| Conread position: | 95-388 |
| Cow position: | chr3:44392029-44391720 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 103 |
| Conread position: | 96-378 |
| Cow position: | chr3:34469173-34469466 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 49, 165 |
| Conread position: | 98-378 |
| Cow position: | chr3:62437270-62436997 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 49, 92 |
| Conread position: | 103-343 |
| Cow position: | chr3:84817578-84817331 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 103-378 |
| Cow position: | chr3:15850163-15850447 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 123 |
| Conread position: | 112-380 |
| Cow position: | chr3:25016194-25015912 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 35, 90 |
| Conread position: | 115-378 |
| Cow position: | chr3:53934617-53934351 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 137 |
| Conread position: | 117-351 |
| Cow position: | chr3:28910864-28910636 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 31, 68 |
| Conread position: | 118-373 |
| Cow position: | chr3:41249797-41249542 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 141-378 |
| Cow position: | chr3:58861792-58862036 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 7 |
| Conread position: | 147-380 |
| Cow position: | chr3:48912940-48912705 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 85, 11 |
| Conread position: | 148-362 |
| Cow position: | chr3:22525417-22525195 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 148-378 |
| Cow position: | chr3:48851769-48851554 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 148-381 |
| Cow position: | chr3:30554377-30554604 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 148-385 |
| Cow position: | chr3:79673935-79674162 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 148-398 |
| Cow position: | chr3:26481605-26481351 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 148-454 |
| Cow position: | chr3:5821009-5821303 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 236, 57 |
| Conread position: | 149-380 |
| Cow position: | chr3:81561177-81561409 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 48, 59 |
| Conread position: | 150-376 |
| Cow position: | chr3:33804682-33804916 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 125 |
| Conread position: | 150-378 |
| Cow position: | chr3:55862282-55862065 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 31 |
| Conread position: | 151-364 |
| Cow position: | chr3:69878161-69878371 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 148 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 66, 79 |
| Conread position: | 160-347 |
| Cow position: | chr3:6586393-6586586 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 165-378 |
| Cow position: | chr3:28940958-28941173 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 59, 131 |
| Conread position: | 165-383 |
| Cow position: | chr3:31303367-31303146 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 166-361 |
| Cow position: | chr3:58166712-58166527 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 167-373 |
| Cow position: | chr3:52858653-52858863 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 51, 128 |
| Conread position: | 179-368 |
| Cow position: | chr3:59212616-59212422 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 189-378 |
| Cow position: | chr3:2195650-2195833 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 205-383 |
| Cow position: | chr3:32308617-32308440 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 10 |
| Conread position: | 208-373 |
| Cow position: | chr3:57017723-57017558 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 121 |
| Conread position: | 215-369 |
| Cow position: | chr3:26015337-26015184 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 20, 76 |
| Conread position: | 215-372 |
| Cow position: | chr3:59600596-59600752 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 126, 59 |
| Conread position: | 215-378 |
| Cow position: | chr3:22534435-22534598 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 127, 70 |
| Conread position: | 215-381 |
| Cow position: | chr3:74057269-74057430 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 219-380 |
| Cow position: | chr3:33065168-33065008 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 220-378 |
| Cow position: | chr3:7151770-7151615 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 221-381 |
| Cow position: | chr3:52847825-52847665 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 74 |
| Conread position: | 225-376 |
| Cow position: | chr3:9847465-9847316 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 228-391 |
| Cow position: | chr3:68008766-68008605 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 42 |
| Conread position: | 229-362 |
| Cow position: | chr3:22368485-22368615 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 234-381 |
| Cow position: | chr3:39223215-39223068 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-362 |
| Cow position: | chr3:29915763-29915640 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 53 |
| Conread position: | 251-373 |
| Cow position: | chr3:46056659-46056778 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 59, 39 |
| Conread position: | 251-375 |
| Cow position: | chr3:67654485-67654362 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 255-375 |
| Cow position: | chr3:3974371-3974251 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 263-378 |
| Cow position: | chr3:71034700-71034814 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 263-378 |
| Cow position: | chr3:78476666-78476551 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-367 |
| Cow position: | chr3:50471764-50471866 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 268-378 |
| Cow position: | chr3:72968891-72968783 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.