Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 46-382 |
| Cow position: | chr4:60881779-60882128 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 156 |
| Conread position: | 59-368 |
| Cow position: | chr4:45184474-45184796 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 245 |
| Conread position: | 62-383 |
| Cow position: | chr4:61416766-61416441 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 68-345 |
| Cow position: | chr4:50223245-50223532 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 124 |
| Conread position: | 76-348 |
| Cow position: | chr4:55914507-55914792 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 15, 53 |
| Conread position: | 76-362 |
| Cow position: | chr4:50094363-50094080 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 84-378 |
| Cow position: | chr4:23852764-23853063 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 86-337 |
| Cow position: | chr4:65459781-65460046 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 87-338 |
| Cow position: | chr4:44837718-44837970 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 87-351 |
| Cow position: | chr4:12004779-12004505 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 107 |
| Conread position: | 87-352 |
| Cow position: | chr4:15628257-15628517 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 87-353 |
| Cow position: | chr4:28353956-28353685 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 48, 204 |
| Conread position: | 87-367 |
| Cow position: | chr4:11534319-11534597 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 110 |
| Conread position: | 87-369 |
| Cow position: | chr4:24496760-24497053 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 208 |
| Conread position: | 87-376 |
| Cow position: | chr4:10117063-10116757 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 60, 192 |
| Conread position: | 87-378 |
| Cow position: | chr4:41029780-41029478 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 87-379 |
| Cow position: | chr4:31608371-31608084 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 114, 60 |
| Conread position: | 87-380 |
| Cow position: | chr4:14219626-14219930 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 34 |
| Conread position: | 87-386 |
| Cow position: | chr4:17212678-17212367 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 30, 9 |
| Conread position: | 87-388 |
| Cow position: | chr4:11576181-11575883 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 75, 126 |
| Conread position: | 88-352 |
| Cow position: | chr4:19195714-19195978 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 57, 19 |
| Conread position: | 88-369 |
| Cow position: | chr4:7998555-7998843 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 83, 113 |
| Conread position: | 88-381 |
| Cow position: | chr4:21241254-21240952 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 115 |
| Conread position: | 88-382 |
| Cow position: | chr4:3593335-3593637 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 59, 199 |
| Conread position: | 89-352 |
| Cow position: | chr4:10766517-10766241 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 89-361 |
| Cow position: | chr4:69520938-69520656 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 57, 15 |
| Conread position: | 89-362 |
| Cow position: | chr4:43466458-43466740 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 89-368 |
| Cow position: | chr4:34904397-34904686 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 89-378 |
| Cow position: | chr4:33211222-33211533 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 89-378 |
| Cow position: | chr4:44583717-44583419 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 210 |
| Conread position: | 89-378 |
| Cow position: | chr4:49951294-49951584 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 90-378 |
| Cow position: | chr4:32053908-32053609 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 90-386 |
| Cow position: | chr4:10856901-10857209 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 57, 76 |
| Conread position: | 91-383 |
| Cow position: | chr4:43449069-43448770 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 93-379 |
| Cow position: | chr4:40558742-40559033 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 54, 107 |
| Conread position: | 98-372 |
| Cow position: | chr4:53149287-53149561 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 100-376 |
| Cow position: | chr4:10434354-10434630 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 103-411 |
| Cow position: | chr4:10459757-10460067 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 104-362 |
| Cow position: | chr4:23883490-23883236 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 112-383 |
| Cow position: | chr4:20570470-20570756 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 136 |
| Conread position: | 116-378 |
| Cow position: | chr4:863855-863582 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 7, 87 |
| Conread position: | 127-357 |
| Cow position: | chr4:48012556-48012318 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 141-397 |
| Cow position: | chr4:35160243-35160501 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 28, 166 |
| Conread position: | 147-378 |
| Cow position: | chr4:5190310-5190075 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 148-361 |
| Cow position: | chr4:67441218-67441013 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 54, 48 |
| Conread position: | 148-376 |
| Cow position: | chr4:32533274-32533044 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 81, 71 |
| Conread position: | 148-376 |
| Cow position: | chr4:39782561-39782324 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 148-381 |
| Cow position: | chr4:53916268-53916031 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 152-362 |
| Cow position: | chr4:49454141-49454346 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 157-382 |
| Cow position: | chr4:41058843-41058612 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 162-378 |
| Cow position: | chr4:43952937-43952726 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 163-400 |
| Cow position: | chr4:26963925-26964170 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 111 |
| Conread position: | 168-384 |
| Cow position: | chr4:44114099-44114309 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 63, 40 |
| Conread position: | 204-366 |
| Cow position: | chr4:9989364-9989204 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 207-358 |
| Cow position: | chr4:51892204-51892055 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 207-362 |
| Cow position: | chr4:57594526-57594681 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 69 |
| Conread position: | 207-395 |
| Cow position: | chr4:25589322-25589130 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 21 |
| Conread position: | 214-372 |
| Cow position: | chr4:32290004-32289842 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 118, 70 |
| Conread position: | 215-357 |
| Cow position: | chr4:61512545-61512686 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 74 |
| Conread position: | 220-354 |
| Cow position: | chr4:39127592-39127723 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 71 |
| Conread position: | 229-372 |
| Cow position: | chr4:13681889-13681747 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 229-379 |
| Cow position: | chr4:16947459-16947607 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 83, 56 |
| Conread position: | 234-378 |
| Cow position: | chr4:68039334-68039477 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 236-381 |
| Cow position: | chr4:28440965-28440819 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 19, 28 |
| Conread position: | 238-384 |
| Cow position: | chr4:15971592-15971447 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 251-384 |
| Cow position: | chr4:46026096-46025965 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 39 |
Show alignments to all cow chromosomes.