Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 49-381 |
| Cow position: | chr5:23947829-23948167 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 36, 64 |
| Conread position: | 50-378 |
| Cow position: | chr5:31601454-31601785 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 60-331 |
| Cow position: | chr5:9908837-9908564 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 74-348 |
| Cow position: | chr5:28550570-28550844 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 71, 26 |
| Conread position: | 75-381 |
| Cow position: | chr5:45738854-45739166 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 34, 103 |
| Conread position: | 76-340 |
| Cow position: | chr5:29363676-29363401 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 76-376 |
| Cow position: | chr5:36429128-36429445 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 25, 130 |
| Conread position: | 80-370 |
| Cow position: | chr5:2875053-2875354 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 82-373 |
| Cow position: | chr5:55276311-55276016 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 86-369 |
| Cow position: | chr5:31250821-31250526 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 61, 80 |
| Conread position: | 87-330 |
| Cow position: | chr5:21120993-21121234 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 60, 164 |
| Conread position: | 87-358 |
| Cow position: | chr5:72558213-72558493 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 87-362 |
| Cow position: | chr5:34057501-34057784 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 87-370 |
| Cow position: | chr5:48104034-48104328 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 87-378 |
| Cow position: | chr5:27410323-27410618 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 117, 141 |
| Conread position: | 87-378 |
| Cow position: | chr5:50719852-50719555 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 87-380 |
| Cow position: | chr5:48384993-48384700 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 112, 139 |
| Conread position: | 87-381 |
| Cow position: | chr5:37939237-37939517 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 88-348 |
| Cow position: | chr5:19295881-19295613 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 91 |
| Conread position: | 88-354 |
| Cow position: | chr5:39988876-39988603 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 88-354 |
| Cow position: | chr5:75238637-75238899 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 60, 23 |
| Conread position: | 88-362 |
| Cow position: | chr5:33304853-33305120 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 88-362 |
| Cow position: | chr5:67672867-67672577 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 88-365 |
| Cow position: | chr5:23961834-23962121 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 57, 114 |
| Conread position: | 88-371 |
| Cow position: | chr5:43925735-43925442 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 59, 154 |
| Conread position: | 88-377 |
| Cow position: | chr5:30075467-30075165 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 158 |
| Conread position: | 88-378 |
| Cow position: | chr5:25042662-25042946 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 89-353 |
| Cow position: | chr5:61622965-61623240 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 89-377 |
| Cow position: | chr5:37842321-37842618 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 91-379 |
| Cow position: | chr5:30834888-30834593 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 56, 111 |
| Conread position: | 92-378 |
| Cow position: | chr5:40340198-40339910 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 93-372 |
| Cow position: | chr5:5402596-5402871 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 52, 129 |
| Conread position: | 94-370 |
| Cow position: | chr5:69494897-69495162 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 60, 36 |
| Conread position: | 98-342 |
| Cow position: | chr5:17354968-17355221 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 15 |
| Conread position: | 101-386 |
| Cow position: | chr5:40071477-40071760 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 56, 124 |
| Conread position: | 106-367 |
| Cow position: | chr5:5453353-5453095 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 91 |
| Conread position: | 106-378 |
| Cow position: | chr5:15604847-15605128 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 41, 119 |
| Conread position: | 111-378 |
| Cow position: | chr5:35956867-35957141 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 36, 66 |
| Conread position: | 114-378 |
| Cow position: | chr5:14310030-14310292 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 127-357 |
| Cow position: | chr5:48119027-48118780 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 21, 12 |
| Conread position: | 148-372 |
| Cow position: | chr5:22195888-22196110 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 148-379 |
| Cow position: | chr5:21933368-21933582 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 148-390 |
| Cow position: | chr5:29832013-29831770 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 150-372 |
| Cow position: | chr5:3600573-3600355 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 41 |
| Conread position: | 150-378 |
| Cow position: | chr5:48250801-48251030 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 160-375 |
| Cow position: | chr5:66717531-66717306 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 40, 6 |
| Conread position: | 162-372 |
| Cow position: | chr5:49363729-49363513 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 162-378 |
| Cow position: | chr5:14292531-14292741 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 188, 87 |
| Conread position: | 171-377 |
| Cow position: | chr5:68345418-68345625 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 171-417 |
| Cow position: | chr5:39021839-39022093 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 70 |
| Conread position: | 184-353 |
| Cow position: | chr5:24484516-24484349 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 46, 31 |
| Conread position: | 204-376 |
| Cow position: | chr5:43493433-43493602 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 20 |
| Conread position: | 211-370 |
| Cow position: | chr5:36412894-36413049 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 215-333 |
| Cow position: | chr5:41198559-41198442 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 215-376 |
| Cow position: | chr5:3958381-3958223 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 16, 76 |
| Conread position: | 215-376 |
| Cow position: | chr5:36452719-36452561 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 215-397 |
| Cow position: | chr5:26671920-26671743 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 167, 73 |
| Conread position: | 220-381 |
| Cow position: | chr5:17931409-17931251 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 232-352 |
| Cow position: | chr5:6738017-6738136 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 232-372 |
| Cow position: | chr5:31734196-31734056 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 32, 48 |
| Conread position: | 233-357 |
| Cow position: | chr5:2498924-2498800 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-376 |
| Cow position: | chr5:58520769-58520625 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 235-394 |
| Cow position: | chr5:30571719-30571562 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 124, 53 |
| Conread position: | 250-372 |
| Cow position: | chr5:18285602-18285481 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 250-414 |
| Cow position: | chr5:3982868-3982706 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 40 |
| Conread position: | 260-354 |
| Cow position: | chr5:40912836-40912928 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 260-376 |
| Cow position: | chr5:14094371-14094256 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 260-381 |
| Cow position: | chr5:34474408-34474529 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 263-378 |
| Cow position: | chr5:44892927-44892813 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
Show alignments to all cow chromosomes.