Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 40-382 |
| Cow position: | chr6:15651728-15652089 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 261 |
| Conread position: | 54-400 |
| Cow position: | chr6:8127883-8127540 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 159, 20 |
| Conread position: | 76-343 |
| Cow position: | chr6:67034917-67034641 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 112 |
| Conread position: | 76-372 |
| Cow position: | chr6:54387179-54386873 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 219 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 71, 106 |
| Conread position: | 76-378 |
| Cow position: | chr6:23701500-23701812 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 12 |
| Conread position: | 84-358 |
| Cow position: | chr6:58258019-58258305 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 89 |
| Conread position: | 87-354 |
| Cow position: | chr6:22974915-22974656 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 58, 93 |
| Conread position: | 87-362 |
| Cow position: | chr6:29298167-29298443 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 87-362 |
| Cow position: | chr6:29300437-29300713 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 22, 144 |
| Conread position: | 87-368 |
| Cow position: | chr6:43784679-43784387 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 59, 235 |
| Conread position: | 87-370 |
| Cow position: | chr6:47606598-47606306 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 60, 197 |
| Conread position: | 87-381 |
| Cow position: | chr6:47813199-47813494 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 88-362 |
| Cow position: | chr6:29868425-29868709 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 88-369 |
| Cow position: | chr6:18872133-18871838 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 88-376 |
| Cow position: | chr6:23687679-23687389 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 59, 115 |
| Conread position: | 88-378 |
| Cow position: | chr6:40111847-40112148 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 88-380 |
| Cow position: | chr6:46375641-46375338 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 108 |
| Conread position: | 88-381 |
| Cow position: | chr6:68653378-68653684 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 59, 216 |
| Conread position: | 88-389 |
| Cow position: | chr6:23493779-23493472 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 94 |
| Conread position: | 88-390 |
| Cow position: | chr6:8461644-8461950 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 59, 113 |
| Conread position: | 88-401 |
| Cow position: | chr6:64273180-64273492 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 81, 146 |
| Conread position: | 89-348 |
| Cow position: | chr6:30340976-30340710 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 52, 113 |
| Conread position: | 89-348 |
| Cow position: | chr6:62850582-62850854 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 46, 115 |
| Conread position: | 89-378 |
| Cow position: | chr6:21338513-21338222 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 88 |
| Conread position: | 89-378 |
| Cow position: | chr6:30280485-30280786 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 89-380 |
| Cow position: | chr6:34700137-34700420 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 57, 135 |
| Conread position: | 89-381 |
| Cow position: | chr6:1081939-1081645 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 115 |
| Conread position: | 90-358 |
| Cow position: | chr6:2954478-2954756 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 182 |
| Conread position: | 90-378 |
| Cow position: | chr6:8149050-8148761 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 138, 16 |
| Conread position: | 90-378 |
| Cow position: | chr6:42150013-42149730 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 90-380 |
| Cow position: | chr6:18126246-18126531 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 90-398 |
| Cow position: | chr6:51896445-51896140 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 64, 121 |
| Conread position: | 92-368 |
| Cow position: | chr6:3603302-3603016 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 98-346 |
| Cow position: | chr6:58453630-58453377 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 48, 195 |
| Conread position: | 98-352 |
| Cow position: | chr6:67831178-67830915 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 131 |
| Conread position: | 98-378 |
| Cow position: | chr6:5101092-5100817 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 49, 78 |
| Conread position: | 103-381 |
| Cow position: | chr6:62268055-62267771 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 94 |
| Conread position: | 104-371 |
| Cow position: | chr6:15741083-15740809 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 111, 54 |
| Conread position: | 110-371 |
| Cow position: | chr6:48557757-48558017 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 30, 93 |
| Conread position: | 112-368 |
| Cow position: | chr6:9248529-9248790 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 112-378 |
| Cow position: | chr6:6527614-6527893 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 23, 193 |
| Conread position: | 113-380 |
| Cow position: | chr6:50559501-50559770 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 148-354 |
| Cow position: | chr6:38756520-38756729 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 88, 23 |
| Conread position: | 148-361 |
| Cow position: | chr6:16745025-16744817 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 148-368 |
| Cow position: | chr6:45114562-45114336 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 148-378 |
| Cow position: | chr6:18098700-18098934 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 22 |
| Conread position: | 148-380 |
| Cow position: | chr6:37778612-37778372 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 188 |
| Conread position: | 148-381 |
| Cow position: | chr6:16717190-16716966 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 148-383 |
| Cow position: | chr6:49715308-49715549 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 148-393 |
| Cow position: | chr6:28844909-28845158 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 170 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 74, 237 |
| Conread position: | 148-394 |
| Cow position: | chr6:51427100-51426852 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 165-380 |
| Cow position: | chr6:29572687-29572909 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 184-381 |
| Cow position: | chr6:23436643-23436449 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 194-362 |
| Cow position: | chr6:24265381-24265211 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 43 |
| Conread position: | 205-355 |
| Cow position: | chr6:58059232-58059083 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 140, 11 |
| Conread position: | 212-362 |
| Cow position: | chr6:39585021-39585169 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 52 |
| Conread position: | 215-331 |
| Cow position: | chr6:55517766-55517881 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 215-362 |
| Cow position: | chr6:14787615-14787470 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 78 |
| Conread position: | 215-380 |
| Cow position: | chr6:27679391-27679227 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 215-383 |
| Cow position: | chr6:24464711-24464544 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 216-354 |
| Cow position: | chr6:12673557-12673420 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 221-373 |
| Cow position: | chr6:50961911-50961759 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 129, 69 |
| Conread position: | 224-375 |
| Cow position: | chr6:60060400-60060253 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 234-378 |
| Cow position: | chr6:60481904-60482044 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 235-354 |
| Cow position: | chr6:46457125-46457242 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 235-386 |
| Cow position: | chr6:44489371-44489518 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 250-362 |
| Cow position: | chr6:25337454-25337341 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 102, 0 |
Show alignments to all cow chromosomes.