Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 44-377 |
| Cow position: | chr8:10628321-10628665 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 41, 6 |
| Conread position: | 48-376 |
| Cow position: | chr8:27319545-27319855 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 49-384 |
| Cow position: | chr8:40079103-40079437 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 120, 38 |
| Conread position: | 50-453 |
| Cow position: | chr8:56717287-56717692 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 97, 27 |
| Conread position: | 62-343 |
| Cow position: | chr8:3208327-3208042 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 110 |
| Conread position: | 76-361 |
| Cow position: | chr8:34510664-34510372 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 72, 97 |
| Conread position: | 77-380 |
| Cow position: | chr8:20883718-20883402 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 12, 227 |
| Conread position: | 79-342 |
| Cow position: | chr8:30558995-30558720 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 83-368 |
| Cow position: | chr8:24115356-24115643 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 64, 123 |
| Conread position: | 84-348 |
| Cow position: | chr8:54860442-54860708 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 135, 64 |
| Conread position: | 87-347 |
| Cow position: | chr8:45812980-45812705 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 214 |
| Conread position: | 87-372 |
| Cow position: | chr8:34833142-34833431 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 28, 10 |
| Conread position: | 87-373 |
| Cow position: | chr8:2274946-2275244 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 87-378 |
| Cow position: | chr8:13957231-13957529 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 60, 95 |
| Conread position: | 87-378 |
| Cow position: | chr8:56559469-56559163 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 274 |
| Conread position: | 87-380 |
| Cow position: | chr8:30540122-30539824 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 62, 115 |
| Conread position: | 87-380 |
| Cow position: | chr8:51510289-51509978 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 58, 139 |
| Conread position: | 88-378 |
| Cow position: | chr8:5860993-5860697 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 51 |
| Conread position: | 88-378 |
| Cow position: | chr8:9820207-9819902 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 88-378 |
| Cow position: | chr8:22449153-22449441 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 33 |
| Conread position: | 88-380 |
| Cow position: | chr8:59958355-59958062 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 51, 144 |
| Conread position: | 89-317 |
| Cow position: | chr8:1761548-1761773 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 32, 115 |
| Conread position: | 89-348 |
| Cow position: | chr8:8737959-8737710 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 102 |
| Conread position: | 89-351 |
| Cow position: | chr8:53786500-53786774 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 62, 86 |
| Conread position: | 89-375 |
| Cow position: | chr8:50471969-50471675 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 110, 75 |
| Conread position: | 89-382 |
| Cow position: | chr8:40065882-40066175 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 81 |
| Conread position: | 90-368 |
| Cow position: | chr8:45525255-45525541 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 57, 145 |
| Conread position: | 90-378 |
| Cow position: | chr8:18294437-18294169 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 33, 51 |
| Conread position: | 90-378 |
| Cow position: | chr8:29433882-29433589 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 67, 93 |
| Conread position: | 91-378 |
| Cow position: | chr8:47148134-47148416 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 106-380 |
| Cow position: | chr8:36955538-36955821 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 39, 91 |
| Conread position: | 117-378 |
| Cow position: | chr8:16770678-16770949 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 79 |
| Conread position: | 126-348 |
| Cow position: | chr8:55336263-55336499 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 148-358 |
| Cow position: | chr8:51192455-51192669 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 148-376 |
| Cow position: | chr8:60681937-60681717 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 163, 69 |
| Conread position: | 148-379 |
| Cow position: | chr8:33623518-33623738 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 157-376 |
| Cow position: | chr8:46108389-46108611 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 39 |
| Conread position: | 162-353 |
| Cow position: | chr8:13919423-13919232 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 162-377 |
| Cow position: | chr8:55362815-55363035 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 73, 164 |
| Conread position: | 176-344 |
| Cow position: | chr8:23913003-23912830 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 24, 120 |
| Conread position: | 208-362 |
| Cow position: | chr8:43430872-43430721 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 215-354 |
| Cow position: | chr8:24374621-24374479 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 215-354 |
| Cow position: | chr8:59332473-59332337 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 215-362 |
| Cow position: | chr8:21305696-21305839 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 215-377 |
| Cow position: | chr8:24699484-24699645 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 33, 76 |
| Conread position: | 217-354 |
| Cow position: | chr8:59348194-59348058 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 27, 35 |
| Conread position: | 219-378 |
| Cow position: | chr8:17507612-17507769 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 121, 71 |
| Conread position: | 220-358 |
| Cow position: | chr8:37890743-37890611 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 97 |
| Conread position: | 220-373 |
| Cow position: | chr8:29410374-29410224 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 62 |
| Conread position: | 232-378 |
| Cow position: | chr8:53819655-53819800 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 58, 34 |
| Conread position: | 234-386 |
| Cow position: | chr8:32227616-32227765 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 75, 51 |
| Conread position: | 235-362 |
| Cow position: | chr8:4511088-4510965 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 237-357 |
| Cow position: | chr8:9579380-9579263 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 241-383 |
| Cow position: | chr8:32564260-32564119 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 250-362 |
| Cow position: | chr8:13487009-13486899 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 251-388 |
| Cow position: | chr8:30120494-30120358 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 61, 33 |
| Conread position: | 263-378 |
| Cow position: | chr8:4356107-4356222 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.