Cow genome map

Conread name: Ss1.1-Pig3-SRG8006P11.3

Conread position: 50-352
Cow position: chr9:31262001-31261677 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 223
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 115

Conread position: 50-352
Cow position: chr9:56511624-56511942 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 35, 259

Conread position: 74-378
Cow position: chr9:49745796-49746103 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 220
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 131

Conread position: 77-378
Cow position: chr9:12382355-12382048 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 148

Conread position: 84-354
Cow position: chr9:28331616-28331325 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 5, 228

Conread position: 87-378
Cow position: chr9:11362116-11361818 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 58, 24

Conread position: 87-378
Cow position: chr9:22711889-22711606 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 26, 0

Conread position: 87-394
Cow position: chr9:44178316-44178004 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 60, 32

Conread position: 88-349
Cow position: chr9:14349173-14348913 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 171

Conread position: 88-364
Cow position: chr9:41021311-41021591 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 58, 114

Conread position: 88-372
Cow position: chr9:21252208-21251913 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 202
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 59, 135

Conread position: 88-378
Cow position: chr9:45607035-45607327 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 198
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 59, 90

Conread position: 88-378
Cow position: chr9:46284443-46284743 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 61, 213

Conread position: 88-378
Cow position: chr9:51554138-51554440 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 198

Conread position: 89-337
Cow position: chr9:23391449-23391200 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 58, 111

Conread position: 89-362
Cow position: chr9:14385642-14385922 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 58, 132

Conread position: 89-368
Cow position: chr9:31136722-31137006 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 194
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 68, 108

Conread position: 89-381
Cow position: chr9:50768232-50768524 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 195
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 20

Conread position: 89-383
Cow position: chr9:30332286-30331992 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 58, 160

Conread position: 90-358
Cow position: chr9:15994881-15995154 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 86, 47

Conread position: 90-362
Cow position: chr9:27332181-27331908 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 61, 86

Conread position: 90-370
Cow position: chr9:49860122-49859829 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 204
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 59, 172

Conread position: 91-378
Cow position: chr9:12692695-12692997 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 56, 112

Conread position: 93-357
Cow position: chr9:46592391-46592652 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 190
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 54, 32

Conread position: 98-339
Cow position: chr9:9604105-9604341 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 49, 103

Conread position: 100-378
Cow position: chr9:50583859-50584148 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 47, 132

Conread position: 103-371
Cow position: chr9:46248353-46248081 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 43, 69

Conread position: 107-364
Cow position: chr9:40278701-40278964 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 185
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 67

Conread position: 111-348
Cow position: chr9:57632832-57632597 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 36, 83

Conread position: 111-385
Cow position: chr9:28831989-28832265 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 190
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 35, 15

Conread position: 112-378
Cow position: chr9:46492564-46492285 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 9

Conread position: 127-488
Cow position: chr9:34006827-34007194 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 245
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 20, 78

Conread position: 148-372
Cow position: chr9:55028105-55028336 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 159
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 52, 25

Conread position: 148-402
Cow position: chr9:2353933-2354188 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 32

Conread position: 150-383
Cow position: chr9:55328491-55328251 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 39, 144

Conread position: 166-378
Cow position: chr9:19001984-19001785 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 153
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 167-373
Cow position: chr9:17721026-17721236 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 53, 166

Conread position: 167-378
Cow position: chr9:12334515-12334723 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 48

Conread position: 203-388
Cow position: chr9:50193235-50193418 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 27, 21

Conread position: 207-389
Cow position: chr9:15020700-15020886 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 69

Conread position: 208-369
Cow position: chr9:954675-954517 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 142, 5

Conread position: 215-386
Cow position: chr9:12413030-12412860 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 125
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 29, 50

Conread position: 216-369
Cow position: chr9:58345375-58345229 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 219-376
Cow position: chr9:13301247-13301095 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 12, 67

Conread position: 220-379
Cow position: chr9:55004151-55004309 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 39

Conread position: 222-368
Cow position: chr9:13012647-13012790 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 224-367
Cow position: chr9:36513291-36513149 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 7, 53

Conread position: 234-378
Cow position: chr9:24201028-24201170 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 93, 0

Conread position: 234-379
Cow position: chr9:47710581-47710438 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 20, 62

Conread position: 234-381
Cow position: chr9:12449197-12449344 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 235-357
Cow position: chr9:15821610-15821490 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 74, 49

Conread position: 235-384
Cow position: chr9:47714332-47714185 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 74, 50

Conread position: 245-376
Cow position: chr9:8835019-8834888 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 19

Conread position: 260-382
Cow position: chr9:48246085-48246205 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 261-381
Cow position: chr9:12992084-12992202 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 263-378
Cow position: chr9:42055022-42055137 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.