Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8006P11.3 |
| Conread position: | 48-405 |
| Cow position: | chrX:13184647-13184286 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 53-369 |
| Cow position: | chrX:7878728-7879076 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 58-378 |
| Cow position: | chrX:6444093-6443760 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 16 |
| Conread position: | 60-377 |
| Cow position: | chrX:28818626-28818294 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 76-342 |
| Cow position: | chrX:28822597-28822316 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 129 |
| Conread position: | 76-376 |
| Cow position: | chrX:27379661-27379361 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 123, 45 |
| Conread position: | 76-378 |
| Cow position: | chrX:33762330-33762638 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 71, 189 |
| Conread position: | 77-327 |
| Cow position: | chrX:25361472-25361211 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 199 |
| Conread position: | 80-348 |
| Cow position: | chrX:18133896-18133626 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 48, 33 |
| Conread position: | 80-352 |
| Cow position: | chrX:20370675-20370391 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 67, 120 |
| Conread position: | 80-362 |
| Cow position: | chrX:33779420-33779716 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 80-383 |
| Cow position: | chrX:26701175-26700859 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 66, 121 |
| Conread position: | 81-372 |
| Cow position: | chrX:38890545-38890244 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 66, 11 |
| Conread position: | 83-380 |
| Cow position: | chrX:15757269-15756965 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 63 |
| Conread position: | 87-362 |
| Cow position: | chrX:8468719-8468455 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 85, 19 |
| Conread position: | 87-372 |
| Cow position: | chrX:35810114-35809836 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 14, 40 |
| Conread position: | 87-377 |
| Cow position: | chrX:4280621-4280319 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 58, 89 |
| Conread position: | 87-378 |
| Cow position: | chrX:6612627-6612942 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 87-378 |
| Cow position: | chrX:39878065-39878373 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 196 |
| Conread position: | 87-380 |
| Cow position: | chrX:25444209-25444502 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 126, 61 |
| Conread position: | 87-380 |
| Cow position: | chrX:38413928-38414243 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 87-381 |
| Cow position: | chrX:34795479-34795175 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 88-312 |
| Cow position: | chrX:38639937-38640169 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 198 |
| Conread position: | 88-352 |
| Cow position: | chrX:29524781-29524506 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 88 |
| Conread position: | 88-370 |
| Cow position: | chrX:10990063-10989773 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 55, 132 |
| Conread position: | 89-348 |
| Cow position: | chrX:36101497-36101762 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 56, 113 |
| Conread position: | 89-378 |
| Cow position: | chrX:4084777-4085067 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 7 |
| Conread position: | 89-383 |
| Cow position: | chrX:43786540-43786238 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 69, 283 |
| Conread position: | 89-385 |
| Cow position: | chrX:8929375-8929676 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 63, 184 |
| Conread position: | 89-389 |
| Cow position: | chrX:35551813-35552114 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 222 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 57, 137 |
| Conread position: | 90-366 |
| Cow position: | chrX:7996239-7996520 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 90-385 |
| Cow position: | chrX:25152187-25151893 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 57, 44 |
| Conread position: | 90-400 |
| Cow position: | chrX:29475989-29475673 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 86 |
| Conread position: | 91-378 |
| Cow position: | chrX:41241388-41241102 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 91 |
| Conread position: | 91-378 |
| Cow position: | chrX:41243327-41243600 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 54, 133 |
| Conread position: | 92-354 |
| Cow position: | chrX:7431647-7431911 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 66, 118 |
| Conread position: | 92-372 |
| Cow position: | chrX:7897058-7897342 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 93-362 |
| Cow position: | chrX:17622074-17621790 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 94-369 |
| Cow position: | chrX:46794056-46794326 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 42 |
| Conread position: | 98-378 |
| Cow position: | chrX:32030331-32030610 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 104, 8 |
| Conread position: | 112-382 |
| Cow position: | chrX:9293399-9293119 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 225 |
| Conread position: | 113-376 |
| Cow position: | chrX:41341813-41342074 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 45, 69 |
| Conread position: | 143-378 |
| Cow position: | chrX:13231486-13231247 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 96 |
| Conread position: | 148-362 |
| Cow position: | chrX:31770304-31770517 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 148-372 |
| Cow position: | chrX:25974772-25974999 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 148-378 |
| Cow position: | chrX:1707107-1707330 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 89, 59 |
| Conread position: | 148-383 |
| Cow position: | chrX:30732478-30732719 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 53, 122 |
| Conread position: | 148-389 |
| Cow position: | chrX:31266060-31265815 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 148-451 |
| Cow position: | chrX:23897206-23897511 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 219 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 184-362 |
| Cow position: | chrX:15333290-15333112 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 36, 62 |
| Conread position: | 204-361 |
| Cow position: | chrX:41260867-41260713 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 209-379 |
| Cow position: | chrX:36078500-36078667 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 98, 10 |
| Conread position: | 211-362 |
| Cow position: | chrX:46071381-46071231 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 55 |
| Conread position: | 211-378 |
| Cow position: | chrX:45456991-45457159 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 215-362 |
| Cow position: | chrX:2877190-2877044 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 218-348 |
| Cow position: | chrX:26637933-26637810 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 219-396 |
| Cow position: | chrX:2180335-2180512 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 220-352 |
| Cow position: | chrX:1703511-1703380 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 224-380 |
| Cow position: | chrX:4606833-4606678 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 104 |
| Conread position: | 229-380 |
| Cow position: | chrX:6083568-6083717 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 232-381 |
| Cow position: | chrX:22111751-22111604 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 234-368 |
| Cow position: | chrX:38206924-38206790 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-378 |
| Cow position: | chrX:11012780-11012639 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 235-378 |
| Cow position: | chrX:35228391-35228534 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 235-380 |
| Cow position: | chrX:9405078-9404936 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 250-358 |
| Cow position: | chrX:24592145-24592039 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 250-405 |
| Cow position: | chrX:17713634-17713787 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 259-370 |
| Cow position: | chrX:11478682-11478571 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 259-382 |
| Cow position: | chrX:27088969-27089086 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 260-414 |
| Cow position: | chrX:24936483-24936327 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 120, 72 |
| Conread position: | 270-369 |
| Cow position: | chrX:29534263-29534362 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.