Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010N20.5 |
| Conread position: | 41-290 |
| Cow position: | chr1:57781656-57781408 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 236, 87 |
| Conread position: | 54-290 |
| Cow position: | chr1:28326452-28326687 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 223, 76 |
| Conread position: | 510-630 |
| Cow position: | chr1:45535722-45535603 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 510-636 |
| Cow position: | chr1:50679266-50679391 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 46, 8 |
| Conread position: | 510-636 |
| Cow position: | chr1:54258582-54258456 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 41, 85 |
| Conread position: | 510-636 |
| Cow position: | chr1:68763669-68763791 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 511-636 |
| Cow position: | chr1:52052703-52052829 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 513-636 |
| Cow position: | chr1:45673728-45673601 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 514-626 |
| Cow position: | chr1:65103632-65103521 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 514-630 |
| Cow position: | chr1:43352643-43352761 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 514-630 |
| Cow position: | chr1:68826893-68827007 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 514-631 |
| Cow position: | chr1:26702192-26702310 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 514-632 |
| Cow position: | chr1:43447817-43447936 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 514-632 |
| Cow position: | chr1:81228323-81228442 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 78 |
| Conread position: | 514-632 |
| Cow position: | chr1:81471144-81471028 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 514-635 |
| Cow position: | chr1:5872956-5873078 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 56 |
| Conread position: | 514-636 |
| Cow position: | chr1:4032643-4032520 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:4374326-4374449 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 99, 60 |
| Conread position: | 514-636 |
| Cow position: | chr1:5409604-5409722 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:22394814-22394687 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:22448570-22448695 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:25387066-25386945 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:31348426-31348548 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 54 |
| Conread position: | 514-636 |
| Cow position: | chr1:41181856-41181737 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:51684818-51684693 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:53374444-53374323 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:54199368-54199490 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:63434795-63434914 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:71119532-71119410 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 21, 102 |
| Conread position: | 514-636 |
| Cow position: | chr1:73561636-73561755 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:74927895-74927776 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:76470666-76470547 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:81472882-81472765 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:85596955-85596833 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-636 |
| Cow position: | chr1:93528710-93528590 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 53, 29 |
| Conread position: | 515-629 |
| Cow position: | chr1:46030970-46030858 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 515-636 |
| Cow position: | chr1:666376-666257 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 515-636 |
| Cow position: | chr1:42398181-42398302 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 515-636 |
| Cow position: | chr1:63390757-63390879 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 515-636 |
| Cow position: | chr1:92996881-92997004 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 64 |
| Conread position: | 516-628 |
| Cow position: | chr1:74956008-74956121 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 516-629 |
| Cow position: | chr1:68618923-68619034 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 516-632 |
| Cow position: | chr1:24445618-24445732 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 516-632 |
| Cow position: | chr1:64572524-64572409 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 516-632 |
| Cow position: | chr1:81355696-81355812 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 39, 106 |
| Conread position: | 516-634 |
| Cow position: | chr1:68951636-68951521 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 516-636 |
| Cow position: | chr1:20544307-20544186 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 516-636 |
| Cow position: | chr1:90868432-90868549 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 519-636 |
| Cow position: | chr1:82443448-82443564 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 520-627 |
| Cow position: | chr1:72105417-72105312 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-630 |
| Cow position: | chr1:43703414-43703305 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-632 |
| Cow position: | chr1:87072704-87072593 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 32, 68 |
| Conread position: | 520-635 |
| Cow position: | chr1:84239104-84239220 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:3607818-3607702 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:4291171-4291052 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:32001308-32001429 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:34771498-34771612 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:45288866-45288980 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:52956262-52956144 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 39, 29 |
| Conread position: | 520-636 |
| Cow position: | chr1:61284060-61283943 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:69694987-69695100 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:79165077-79165194 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:85550073-85550186 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-636 |
| Cow position: | chr1:98311075-98310959 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 114, 37 |
| Conread position: | 521-636 |
| Cow position: | chr1:47886479-47886594 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-631 |
| Cow position: | chr1:68845481-68845586 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 522-636 |
| Cow position: | chr1:33811933-33811821 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 529-636 |
| Cow position: | chr1:73536738-73536630 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 534-636 |
| Cow position: | chr1:51654404-51654303 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 539-636 |
| Cow position: | chr1:65909516-65909419 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 545-636 |
| Cow position: | chr1:90595569-90595661 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 548-636 |
| Cow position: | chr1:6304883-6304971 (view UCSC Genome Browser custom track) |
| Alignm length: | 89 |
| Alignm identity: | 77 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.