Cow genome map

Conread name: Ss1.1-Pig3-SRG8010N20.5

Conread position: 41-290
Cow position: chr16:13881383-13881135 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 183
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 180, 89

Conread position: 509-630
Cow position: chr16:46061299-46061179 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 9

Conread position: 510-632
Cow position: chr16:41578236-41578115 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 29, 0

Conread position: 510-636
Cow position: chr16:11568108-11568231 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 102
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 78

Conread position: 511-636
Cow position: chr16:23810920-23810798 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 512-636
Cow position: chr16:37117083-37116959 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 513-632
Cow position: chr16:36120976-36121090 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 31, 0

Conread position: 514-631
Cow position: chr16:7152165-7152281 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 31, 0

Conread position: 514-631
Cow position: chr16:7665643-7665527 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 514-631
Cow position: chr16:37452608-37452725 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 101
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 29, 39

Conread position: 514-631
Cow position: chr16:56912708-56912826 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 34, 0

Conread position: 514-632
Cow position: chr16:39646551-39646440 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 514-633
Cow position: chr16:30186651-30186532 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 514-635
Cow position: chr16:16096746-16096623 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 514-636
Cow position: chr16:2223391-2223516 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 514-636
Cow position: chr16:4503288-4503167 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 72, 39

Conread position: 514-636
Cow position: chr16:4910519-4910641 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr16:7542295-7542172 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 514-636
Cow position: chr16:8076496-8076622 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 514-636
Cow position: chr16:9136187-9136062 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 103
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 31, 0

Conread position: 514-636
Cow position: chr16:10148288-10148166 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr16:12274076-12273954 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr16:13969365-13969487 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 105, 51

Conread position: 514-636
Cow position: chr16:18757831-18757954 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 33, 99

Conread position: 514-636
Cow position: chr16:29677628-29677745 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 514-636
Cow position: chr16:31978180-31978299 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chr16:33230082-33229961 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 514-636
Cow position: chr16:38243655-38243776 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 514-636
Cow position: chr16:42253552-42253680 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 514-636
Cow position: chr16:43308554-43308676 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 37, 44

Conread position: 514-636
Cow position: chr16:44973500-44973381 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chr16:54084042-54083921 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 31, 0

Conread position: 514-636
Cow position: chr16:56522464-56522586 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 103, 51

Conread position: 515-627
Cow position: chr16:2417584-2417695 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 42, 0

Conread position: 515-630
Cow position: chr16:13578856-13578970 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 34, 0

Conread position: 515-630
Cow position: chr16:33267720-33267608 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 32, 0

Conread position: 515-632
Cow position: chr16:11102816-11102933 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 515-632
Cow position: chr16:44744128-44744244 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 515-632
Cow position: chr16:50521482-50521367 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 515-636
Cow position: chr16:4902593-4902472 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 26, 48

Conread position: 515-636
Cow position: chr16:8448643-8448760 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 515-636
Cow position: chr16:10032644-10032525 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 515-636
Cow position: chr16:10039839-10039953 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 515-636
Cow position: chr16:27020076-27019960 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 515-636
Cow position: chr16:42734006-42734129 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 34, 99

Conread position: 515-636
Cow position: chr16:45609992-45609876 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 516-632
Cow position: chr16:14242375-14242261 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 37, 0

Conread position: 516-632
Cow position: chr16:39417116-39417228 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 516-632
Cow position: chr16:47620383-47620270 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 516-632
Cow position: chr16:54226593-54226709 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 516-636
Cow position: chr16:13791521-13791403 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 516-636
Cow position: chr16:16402319-16402438 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 85, 30

Conread position: 519-636
Cow position: chr16:18052333-18052216 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 38

Conread position: 520-630
Cow position: chr16:8933425-8933532 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 33, 0

Conread position: 520-631
Cow position: chr16:13232949-13233058 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 520-631
Cow position: chr16:43800917-43801028 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 9

Conread position: 520-632
Cow position: chr16:820250-820138 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 520-632
Cow position: chr16:7549968-7549857 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 520-632
Cow position: chr16:20025444-20025336 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 520-632
Cow position: chr16:26068932-26068821 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 33

Conread position: 520-632
Cow position: chr16:43105515-43105623 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 520-635
Cow position: chr16:33869765-33869874 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 20, 0

Conread position: 520-635
Cow position: chr16:56796666-56796779 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chr16:3246205-3246319 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 520-636
Cow position: chr16:3614747-3614631 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 520-636
Cow position: chr16:9790631-9790745 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 520-636
Cow position: chr16:11008345-11008229 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 0, 0

Conread position: 520-636
Cow position: chr16:14758738-14758619 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 520-636
Cow position: chr16:21905163-21905051 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 520-636
Cow position: chr16:30135893-30136008 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 37, 0

Conread position: 520-636
Cow position: chr16:30614980-30615094 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 520-636
Cow position: chr16:31159572-31159686 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 520-636
Cow position: chr16:38663710-38663822 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 520-636
Cow position: chr16:42340196-42340081 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 28, 34

Conread position: 520-636
Cow position: chr16:49125529-49125643 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 0

Conread position: 520-636
Cow position: chr16:49169381-49169500 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 520-636
Cow position: chr16:53627428-53627542 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chr16:54664800-54664914 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 33, 0

Conread position: 521-635
Cow position: chr16:48145400-48145516 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 27

Conread position: 521-636
Cow position: chr16:19047435-19047550 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 21, 37

Conread position: 521-636
Cow position: chr16:32069494-32069604 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 44, 0

Conread position: 521-636
Cow position: chr16:35188252-35188140 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 521-636
Cow position: chr16:37380269-37380154 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 522-636
Cow position: chr16:15808973-15808860 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 91
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 524-635
Cow position: chr16:7082732-7082847 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 525-636
Cow position: chr16:26501153-26501041 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 109, 0

Conread position: 544-636
Cow position: chr16:11775072-11775163 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 80
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 546-636
Cow position: chr16:54734221-54734131 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 79
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.