Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010N20.5 |
| Conread position: | 48-275 |
| Cow position: | chr18:8216053-8215828 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 173, 82 |
| Conread position: | 48-275 |
| Cow position: | chr18:16057135-16057356 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 173, 39 |
| Conread position: | 510-635 |
| Cow position: | chr18:19896475-19896601 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 512-636 |
| Cow position: | chr18:52382678-52382552 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 513-635 |
| Cow position: | chr18:33606604-33606485 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 513-636 |
| Cow position: | chr18:37382115-37382240 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 514-632 |
| Cow position: | chr18:10861457-10861574 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 514-632 |
| Cow position: | chr18:15340472-15340590 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 39 |
| Conread position: | 514-632 |
| Cow position: | chr18:18369387-18369506 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 514-632 |
| Cow position: | chr18:43283784-43283900 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 514-635 |
| Cow position: | chr18:18868727-18868602 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:7109102-7108980 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 120, 35 |
| Conread position: | 514-636 |
| Cow position: | chr18:7956118-7955996 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:20174157-20174276 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:22274865-22274983 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:27637184-27637066 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:35537258-35537380 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 98 |
| Conread position: | 514-636 |
| Cow position: | chr18:42966838-42966717 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:43555552-43555672 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:47812443-47812321 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 514-636 |
| Cow position: | chr18:48828802-48828928 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 514-636 |
| Cow position: | chr18:51405934-51406056 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 74, 19 |
| Conread position: | 514-636 |
| Cow position: | chr18:52855027-52854903 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 515-635 |
| Cow position: | chr18:35636375-35636494 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 515-635 |
| Cow position: | chr18:37689114-37688993 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 515-636 |
| Cow position: | chr18:21205335-21205215 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 515-636 |
| Cow position: | chr18:43065501-43065381 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 516-634 |
| Cow position: | chr18:19193395-19193511 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 516-636 |
| Cow position: | chr18:11166951-11166833 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 516-636 |
| Cow position: | chr18:36458904-36458786 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 519-636 |
| Cow position: | chr18:7970339-7970224 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 520-628 |
| Cow position: | chr18:4182221-4182328 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 520-630 |
| Cow position: | chr18:39434793-39434685 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 38 |
| Conread position: | 520-632 |
| Cow position: | chr18:35582131-35582244 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 520-632 |
| Cow position: | chr18:48242156-48242046 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 520-635 |
| Cow position: | chr18:45104475-45104591 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 520-635 |
| Cow position: | chr18:51643399-51643512 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 520-636 |
| Cow position: | chr18:3211844-3211725 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 520-636 |
| Cow position: | chr18:5632234-5632118 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-636 |
| Cow position: | chr18:37023584-37023700 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 520-636 |
| Cow position: | chr18:55499038-55498923 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 520-636 |
| Cow position: | chr18:56181495-56181609 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 521-635 |
| Cow position: | chr18:19687989-19687874 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 522-632 |
| Cow position: | chr18:30295685-30295795 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-636 |
| Cow position: | chr18:2592201-2592315 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 526-636 |
| Cow position: | chr18:56159422-56159314 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 536-636 |
| Cow position: | chr18:36297071-36297171 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 548-635 |
| Cow position: | chr18:7415085-7415172 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 553-636 |
| Cow position: | chr18:13360000-13359918 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 75 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
Show alignments to all cow chromosomes.