Cow genome map

Conread name: Ss1.1-Pig3-SRG8010N20.5

Conread position: 54-290
Cow position: chr21:41562964-41563198 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 176
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 175, 74

Conread position: 510-636
Cow position: chr21:27743822-27743696 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 510-636
Cow position: chr21:41155938-41155812 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 81

Conread position: 512-636
Cow position: chr21:47009164-47009287 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 513-636
Cow position: chr21:36789865-36789744 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 31, 103

Conread position: 514-626
Cow position: chr21:40589415-40589526 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 514-630
Cow position: chr21:45439167-45439284 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 514-631
Cow position: chr21:29014841-29014959 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 514-632
Cow position: chr21:27863444-27863562 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 98
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 29, 76

Conread position: 514-635
Cow position: chr21:40266194-40266074 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chr21:3381009-3381134 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 34

Conread position: 514-636
Cow position: chr21:6713456-6713576 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 26

Conread position: 514-636
Cow position: chr21:10001144-10001024 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chr21:10004816-10004938 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr21:15976702-15976584 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 514-636
Cow position: chr21:17890371-17890252 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 37, 0

Conread position: 514-636
Cow position: chr21:22720297-22720176 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 514-636
Cow position: chr21:24642590-24642469 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 514-636
Cow position: chr21:28244540-28244418 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr21:28919454-28919575 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chr21:32339671-32339788 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 514-636
Cow position: chr21:38664708-38664586 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 67, 84

Conread position: 514-636
Cow position: chr21:42913674-42913796 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chr21:47713935-47714054 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 514-636
Cow position: chr21:47802190-47802309 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 45, 57

Conread position: 515-635
Cow position: chr21:9416318-9416198 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 515-635
Cow position: chr21:43357186-43357308 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 34, 65

Conread position: 515-635
Cow position: chr21:45867002-45866882 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 515-636
Cow position: chr21:4399871-4399752 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 515-636
Cow position: chr21:13840395-13840274 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 515-636
Cow position: chr21:15584351-15584471 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 99
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 515-636
Cow position: chr21:23980114-23980231 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 515-636
Cow position: chr21:31676567-31676448 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 43

Conread position: 515-636
Cow position: chr21:37789931-37790051 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 515-636
Cow position: chr21:41621193-41621073 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 516-632
Cow position: chr21:911899-912014 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 516-632
Cow position: chr21:6102194-6102306 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 516-635
Cow position: chr21:20418615-20418734 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 94
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 516-636
Cow position: chr21:5612177-5612058 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 96
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 26, 73

Conread position: 516-636
Cow position: chr21:8985619-8985496 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 40, 94

Conread position: 516-636
Cow position: chr21:15911470-15911348 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 516-636
Cow position: chr21:30835433-30835312 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 516-636
Cow position: chr21:38449378-38449498 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 516-636
Cow position: chr21:47363669-47363790 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 103
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 118, 0

Conread position: 517-636
Cow position: chr21:28882203-28882084 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 519-636
Cow position: chr21:10410288-10410169 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 29, 0

Conread position: 519-636
Cow position: chr21:14228503-14228621 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 42, 0

Conread position: 520-629
Cow position: chr21:36795666-36795556 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 520-630
Cow position: chr21:34390912-34391020 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 520-631
Cow position: chr21:30607024-30607135 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 520-631
Cow position: chr21:41878534-41878425 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 520-632
Cow position: chr21:12461904-12462017 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 520-636
Cow position: chr21:868861-868976 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 520-636
Cow position: chr21:6998003-6997889 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 520-636
Cow position: chr21:7391214-7391327 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 520-636
Cow position: chr21:8235492-8235605 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chr21:13898251-13898134 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 520-636
Cow position: chr21:14760637-14760523 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 92
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 520-636
Cow position: chr21:18790498-18790610 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 520-636
Cow position: chr21:33359971-33360084 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chr21:39401658-39401543 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 29

Conread position: 521-632
Cow position: chr21:19060028-19060134 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 521-632
Cow position: chr21:20925441-20925553 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 522-632
Cow position: chr21:957734-957626 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 522-636
Cow position: chr21:20153017-20152903 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 97
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 522-636
Cow position: chr21:23586943-23586829 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 89
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 523-632
Cow position: chr21:18495030-18494922 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 34, 0

Show alignments to all cow chromosomes.