Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8010N20.5 |
| Conread position: | 48-282 |
| Cow position: | chr5:47874167-47874399 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 173, 87 |
| Conread position: | 51-275 |
| Cow position: | chr5:27965878-27966100 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 178, 87 |
| Conread position: | 510-627 |
| Cow position: | chr5:6045329-6045211 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 510-636 |
| Cow position: | chr5:58856138-58856014 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 114, 43 |
| Conread position: | 514-632 |
| Cow position: | chr5:4031958-4032077 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 514-632 |
| Cow position: | chr5:24485403-24485521 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 108 |
| Conread position: | 514-632 |
| Cow position: | chr5:71579207-71579090 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:16185119-16184998 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:17063055-17063179 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 35, 12 |
| Conread position: | 514-636 |
| Cow position: | chr5:21964320-21964198 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 67, 41 |
| Conread position: | 514-636 |
| Cow position: | chr5:35208295-35208175 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 73, 35 |
| Conread position: | 514-636 |
| Cow position: | chr5:47323494-47323376 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:51800941-51801061 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:53855731-53855609 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 514-636 |
| Cow position: | chr5:54099539-54099422 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:55756389-55756514 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 514-636 |
| Cow position: | chr5:59257922-59257804 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:16509130-16509007 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:19523930-19523811 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:21944428-21944308 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:29097398-29097278 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:35459264-35459385 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:64137286-64137165 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 20, 43 |
| Conread position: | 515-636 |
| Cow position: | chr5:64168206-64168326 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 43 |
| Conread position: | 515-636 |
| Cow position: | chr5:65883742-65883862 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 515-636 |
| Cow position: | chr5:76119584-76119464 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 516-629 |
| Cow position: | chr5:5111045-5111157 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 516-629 |
| Cow position: | chr5:56070888-56070774 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:8024164-8024280 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:21828897-21828781 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:28927557-28927674 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:32696793-32696906 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:34300948-34300831 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 516-632 |
| Cow position: | chr5:52165148-52165263 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 516-634 |
| Cow position: | chr5:16206124-16206242 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 28, 48 |
| Conread position: | 516-636 |
| Cow position: | chr5:29860380-29860258 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 519-636 |
| Cow position: | chr5:14473378-14473502 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 520-628 |
| Cow position: | chr5:17644629-17644736 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:7921379-7921489 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:13717543-13717656 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 94 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:18289156-18289041 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:23678674-23678791 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 94 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:34115678-34115561 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:42064230-42064114 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:43992349-43992233 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:55955933-55955818 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:56820235-56820351 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-636 |
| Cow position: | chr5:72564789-72564673 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 32, 46 |
| Conread position: | 521-636 |
| Cow position: | chr5:7140082-7140198 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 521-636 |
| Cow position: | chr5:40039744-40039859 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 522-636 |
| Cow position: | chr5:50575807-50575696 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 522-636 |
| Cow position: | chr5:66972452-66972339 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 523-627 |
| Cow position: | chr5:47871018-47871123 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 86 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 523-636 |
| Cow position: | chr5:32140686-32140797 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 527-636 |
| Cow position: | chr5:42748176-42748068 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 539-635 |
| Cow position: | chr5:41884944-41884848 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 48, 10 |
| Conread position: | 539-636 |
| Cow position: | chr5:57526910-57527007 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 86 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 545-632 |
| Cow position: | chr5:19294487-19294574 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 77 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.