Cow genome map

Conread name: Ss1.1-Pig3-SRG8010N20.5

Conread position: 48-275
Cow position: chrX:26414744-26414520 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 166
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 73, 67

Conread position: 48-278
Cow position: chrX:30706423-30706195 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 73, 67

Conread position: 48-290
Cow position: chrX:29146250-29146491 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 173, 82

Conread position: 435-632
Cow position: chrX:38439590-38439394 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 115
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 120, 81

Conread position: 458-636
Cow position: chrX:25282929-25283102 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 514-630
Cow position: chrX:11856462-11856347 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 514-630
Cow position: chrX:12018324-12018210 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 34, 0

Conread position: 514-630
Cow position: chrX:41068757-41068639 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 514-631
Cow position: chrX:10831458-10831576 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 514-632
Cow position: chrX:17498117-17498001 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 61, 0

Conread position: 514-632
Cow position: chrX:42235492-42235612 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 100
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 514-635
Cow position: chrX:37750222-37750344 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 33, 0

Conread position: 514-636
Cow position: chrX:6278466-6278588 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 106
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chrX:10516285-10516168 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 93

Conread position: 514-636
Cow position: chrX:12095742-12095861 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chrX:12116079-12115958 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 0

Conread position: 514-636
Cow position: chrX:14925032-14924912 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 98
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 120, 9

Conread position: 514-636
Cow position: chrX:20168590-20168470 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Conread position: 514-636
Cow position: chrX:21327943-21327818 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 28, 0

Conread position: 514-636
Cow position: chrX:21672586-21672468 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 514-636
Cow position: chrX:24365789-24365913 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 514-636
Cow position: chrX:27261223-27261100 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 93

Conread position: 514-636
Cow position: chrX:27516562-27516441 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 28, 50

Conread position: 514-636
Cow position: chrX:27946022-27946144 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 514-636
Cow position: chrX:28845865-28845743 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 101
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 55, 38

Conread position: 514-636
Cow position: chrX:35681374-35681253 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 0

Conread position: 514-636
Cow position: chrX:36961673-36961555 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 30, 0

Conread position: 514-636
Cow position: chrX:38964140-38964016 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 100
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 514-636
Cow position: chrX:40480837-40480956 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 514-636
Cow position: chrX:40680646-40680523 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 514-636
Cow position: chrX:42855490-42855367 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 42, 77

Conread position: 514-636
Cow position: chrX:46587854-46587732 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 103
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 515-630
Cow position: chrX:29509407-29509523 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 22

Conread position: 515-631
Cow position: chrX:33000936-33000820 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 91
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 515-632
Cow position: chrX:47873305-47873420 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 42, 0

Conread position: 515-636
Cow position: chrX:15815115-15814999 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 515-636
Cow position: chrX:23563760-23563878 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 98
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 47, 0

Conread position: 515-636
Cow position: chrX:27228157-27228040 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 515-636
Cow position: chrX:30133287-30133408 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 49

Conread position: 515-636
Cow position: chrX:40648017-40647898 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 100
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 30, 0

Conread position: 516-626
Cow position: chrX:4515715-4515606 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 516-632
Cow position: chrX:22387216-22387326 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 516-632
Cow position: chrX:27680428-27680315 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 87

Conread position: 516-632
Cow position: chrX:39558318-39558434 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 516-636
Cow position: chrX:13382361-13382242 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 93
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 516-636
Cow position: chrX:23513985-23514103 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 99
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 0

Conread position: 516-636
Cow position: chrX:34441418-34441539 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 97
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 516-636
Cow position: chrX:40826721-40826839 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 96
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 516-636
Cow position: chrX:41743944-41743824 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 38

Conread position: 518-632
Cow position: chrX:37781081-37781195 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 90
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 519-632
Cow position: chrX:36975979-36975868 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 520-632
Cow position: chrX:616233-616346 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 520-632
Cow position: chrX:13785334-13785447 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 40

Conread position: 520-635
Cow position: chrX:29549519-29549634 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 91
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 520-636
Cow position: chrX:161438-161325 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chrX:6234424-6234540 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 90
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 520-636
Cow position: chrX:8797282-8797165 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 520-636
Cow position: chrX:8925725-8925613 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 520-636
Cow position: chrX:20881913-20882025 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 520-636
Cow position: chrX:29601802-29601918 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 520-636
Cow position: chrX:31515199-31515081 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 95
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 35, 72

Conread position: 520-636
Cow position: chrX:34502946-34502834 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 520-636
Cow position: chrX:41027185-41027068 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 520-636
Cow position: chrX:41199132-41199019 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 520-636
Cow position: chrX:42875009-42874896 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 521-622
Cow position: chrX:11717758-11717862 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 88
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 521-635
Cow position: chrX:22813093-22812980 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 97, 44

Conread position: 521-636
Cow position: chrX:23497642-23497756 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 521-636
Cow position: chrX:41166937-41167052 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 90
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 521-636
Cow position: chrX:42461719-42461832 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 522-636
Cow position: chrX:16348540-16348656 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 523-636
Cow position: chrX:42994636-42994529 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 524-631
Cow position: chrX:17949466-17949570 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 89
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 25, 0

Conread position: 525-636
Cow position: chrX:34410247-34410358 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 92
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 40

Conread position: 543-636
Cow position: chrX:35284626-35284532 (view UCSC Genome Browser custom track)
Alignm length: 95
Alignm identity: 80
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 544-632
Cow position: chrX:44397021-44396934 (view UCSC Genome Browser custom track)
Alignm length: 89
Alignm identity: 77
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 544-635
Cow position: chrX:11614704-11614613 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 544-636
Cow position: chrX:5872323-5872233 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 84
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 550-636
Cow position: chrX:27705584-27705499 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 76
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 22, 0

Show alignments to all cow chromosomes.