Cow genome map
Conread name: | Ss1.1-Pig3-SRG8010N20.5 |
Conread position: | 48-275 |
Cow position: | chrX:26414744-26414520 (view UCSC Genome Browser custom track) |
Alignm length: | 230 |
Alignm identity: | 166 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 73, 67 |
Conread position: | 48-278 |
Cow position: | chrX:30706423-30706195 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 165 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 73, 67 |
Conread position: | 48-290 |
Cow position: | chrX:29146250-29146491 (view UCSC Genome Browser custom track) |
Alignm length: | 245 |
Alignm identity: | 172 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 173, 82 |
Conread position: | 435-632 |
Cow position: | chrX:38439590-38439394 (view UCSC Genome Browser custom track) |
Alignm length: | 199 |
Alignm identity: | 115 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 120, 81 |
Conread position: | 458-636 |
Cow position: | chrX:25282929-25283102 (view UCSC Genome Browser custom track) |
Alignm length: | 179 |
Alignm identity: | 128 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 46, 0 |
Conread position: | 514-630 |
Cow position: | chrX:11856462-11856347 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 82, 0 |
Conread position: | 514-630 |
Cow position: | chrX:12018324-12018210 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 95 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 514-630 |
Cow position: | chrX:41068757-41068639 (view UCSC Genome Browser custom track) |
Alignm length: | 119 |
Alignm identity: | 95 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 40, 0 |
Conread position: | 514-631 |
Cow position: | chrX:10831458-10831576 (view UCSC Genome Browser custom track) |
Alignm length: | 119 |
Alignm identity: | 94 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 45, 0 |
Conread position: | 514-632 |
Cow position: | chrX:17498117-17498001 (view UCSC Genome Browser custom track) |
Alignm length: | 119 |
Alignm identity: | 95 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 61, 0 |
Conread position: | 514-632 |
Cow position: | chrX:42235492-42235612 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 100 |
Alignm E-value: | 2e-26 |
Alignm gaps (pig, cow): | 34, 0 |
Conread position: | 514-635 |
Cow position: | chrX:37750222-37750344 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 96 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 514-636 |
Cow position: | chrX:6278466-6278588 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 106 |
Alignm E-value: | 3e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 514-636 |
Cow position: | chrX:10516285-10516168 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 99 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 29, 93 |
Conread position: | 514-636 |
Cow position: | chrX:12095742-12095861 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 98 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 514-636 |
Cow position: | chrX:12116079-12115958 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 99 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 38, 0 |
Conread position: | 514-636 |
Cow position: | chrX:14925032-14924912 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 98 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 120, 9 |
Conread position: | 514-636 |
Cow position: | chrX:20168590-20168470 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 95 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 514-636 |
Cow position: | chrX:21327943-21327818 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 100 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 514-636 |
Cow position: | chrX:21672586-21672468 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 99 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 35, 0 |
Conread position: | 514-636 |
Cow position: | chrX:24365789-24365913 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 97 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 514-636 |
Cow position: | chrX:27261223-27261100 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 97 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 29, 93 |
Conread position: | 514-636 |
Cow position: | chrX:27516562-27516441 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 99 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 28, 50 |
Conread position: | 514-636 |
Cow position: | chrX:27946022-27946144 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 94 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 514-636 |
Cow position: | chrX:28845865-28845743 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 101 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 55, 38 |
Conread position: | 514-636 |
Cow position: | chrX:35681374-35681253 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 96 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 43, 0 |
Conread position: | 514-636 |
Cow position: | chrX:36961673-36961555 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 103 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 514-636 |
Cow position: | chrX:38964140-38964016 (view UCSC Genome Browser custom track) |
Alignm length: | 125 |
Alignm identity: | 100 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 59, 0 |
Conread position: | 514-636 |
Cow position: | chrX:40480837-40480956 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 99 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 514-636 |
Cow position: | chrX:40680646-40680523 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 97 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 514-636 |
Cow position: | chrX:42855490-42855367 (view UCSC Genome Browser custom track) |
Alignm length: | 126 |
Alignm identity: | 101 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 42, 77 |
Conread position: | 514-636 |
Cow position: | chrX:46587854-46587732 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 103 |
Alignm E-value: | 2e-30 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 515-630 |
Cow position: | chrX:29509407-29509523 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 97 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 10, 22 |
Conread position: | 515-631 |
Cow position: | chrX:33000936-33000820 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 91 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 515-632 |
Cow position: | chrX:47873305-47873420 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 94 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 42, 0 |
Conread position: | 515-636 |
Cow position: | chrX:15815115-15814999 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 97 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 515-636 |
Cow position: | chrX:23563760-23563878 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 98 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 515-636 |
Cow position: | chrX:27228157-27228040 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 102 |
Alignm E-value: | 5e-27 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 515-636 |
Cow position: | chrX:30133287-30133408 (view UCSC Genome Browser custom track) |
Alignm length: | 123 |
Alignm identity: | 98 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 27, 49 |
Conread position: | 515-636 |
Cow position: | chrX:40648017-40647898 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 100 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 516-626 |
Cow position: | chrX:4515715-4515606 (view UCSC Genome Browser custom track) |
Alignm length: | 111 |
Alignm identity: | 88 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 516-632 |
Cow position: | chrX:22387216-22387326 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 516-632 |
Cow position: | chrX:27680428-27680315 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 95 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 35, 87 |
Conread position: | 516-632 |
Cow position: | chrX:39558318-39558434 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 516-636 |
Cow position: | chrX:13382361-13382242 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 93 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 516-636 |
Cow position: | chrX:23513985-23514103 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 99 |
Alignm E-value: | 1e-25 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 516-636 |
Cow position: | chrX:34441418-34441539 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 97 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 516-636 |
Cow position: | chrX:40826721-40826839 (view UCSC Genome Browser custom track) |
Alignm length: | 121 |
Alignm identity: | 96 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 21, 0 |
Conread position: | 516-636 |
Cow position: | chrX:41743944-41743824 (view UCSC Genome Browser custom track) |
Alignm length: | 122 |
Alignm identity: | 95 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 28, 38 |
Conread position: | 518-632 |
Cow position: | chrX:37781081-37781195 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 90 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 519-632 |
Cow position: | chrX:36975979-36975868 (view UCSC Genome Browser custom track) |
Alignm length: | 114 |
Alignm identity: | 92 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 520-632 |
Cow position: | chrX:616233-616346 (view UCSC Genome Browser custom track) |
Alignm length: | 114 |
Alignm identity: | 91 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 520-632 |
Cow position: | chrX:13785334-13785447 (view UCSC Genome Browser custom track) |
Alignm length: | 115 |
Alignm identity: | 92 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 24, 40 |
Conread position: | 520-635 |
Cow position: | chrX:29549519-29549634 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 91 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 520-636 |
Cow position: | chrX:161438-161325 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 93 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 520-636 |
Cow position: | chrX:6234424-6234540 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 90 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 520-636 |
Cow position: | chrX:8797282-8797165 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 93 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 39, 0 |
Conread position: | 520-636 |
Cow position: | chrX:8925725-8925613 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 95 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 520-636 |
Cow position: | chrX:20881913-20882025 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 31, 0 |
Conread position: | 520-636 |
Cow position: | chrX:29601802-29601918 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 520-636 |
Cow position: | chrX:31515199-31515081 (view UCSC Genome Browser custom track) |
Alignm length: | 120 |
Alignm identity: | 95 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 35, 72 |
Conread position: | 520-636 |
Cow position: | chrX:34502946-34502834 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 94 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 520-636 |
Cow position: | chrX:41027185-41027068 (view UCSC Genome Browser custom track) |
Alignm length: | 118 |
Alignm identity: | 95 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 36, 0 |
Conread position: | 520-636 |
Cow position: | chrX:41199132-41199019 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 95 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 29, 0 |
Conread position: | 520-636 |
Cow position: | chrX:42875009-42874896 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 96 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 33, 0 |
Conread position: | 521-622 |
Cow position: | chrX:11717758-11717862 (view UCSC Genome Browser custom track) |
Alignm length: | 105 |
Alignm identity: | 88 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 28, 0 |
Conread position: | 521-635 |
Cow position: | chrX:22813093-22812980 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 94 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 97, 44 |
Conread position: | 521-636 |
Cow position: | chrX:23497642-23497756 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 93 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 521-636 |
Cow position: | chrX:41166937-41167052 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 90 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 521-636 |
Cow position: | chrX:42461719-42461832 (view UCSC Genome Browser custom track) |
Alignm length: | 116 |
Alignm identity: | 93 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 32, 0 |
Conread position: | 522-636 |
Cow position: | chrX:16348540-16348656 (view UCSC Genome Browser custom track) |
Alignm length: | 117 |
Alignm identity: | 95 |
Alignm E-value: | 1e-23 |
Alignm gaps (pig, cow): | 30, 0 |
Conread position: | 523-636 |
Cow position: | chrX:42994636-42994529 (view UCSC Genome Browser custom track) |
Alignm length: | 114 |
Alignm identity: | 95 |
Alignm E-value: | 3e-23 |
Alignm gaps (pig, cow): | 26, 0 |
Conread position: | 524-631 |
Cow position: | chrX:17949466-17949570 (view UCSC Genome Browser custom track) |
Alignm length: | 108 |
Alignm identity: | 89 |
Alignm E-value: | 9e-22 |
Alignm gaps (pig, cow): | 25, 0 |
Conread position: | 525-636 |
Cow position: | chrX:34410247-34410358 (view UCSC Genome Browser custom track) |
Alignm length: | 113 |
Alignm identity: | 92 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 93, 40 |
Conread position: | 543-636 |
Cow position: | chrX:35284626-35284532 (view UCSC Genome Browser custom track) |
Alignm length: | 95 |
Alignm identity: | 80 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 8, 0 |
Conread position: | 544-632 |
Cow position: | chrX:44397021-44396934 (view UCSC Genome Browser custom track) |
Alignm length: | 89 |
Alignm identity: | 77 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 9, 0 |
Conread position: | 544-635 |
Cow position: | chrX:11614704-11614613 (view UCSC Genome Browser custom track) |
Alignm length: | 92 |
Alignm identity: | 78 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 544-636 |
Cow position: | chrX:5872323-5872233 (view UCSC Genome Browser custom track) |
Alignm length: | 93 |
Alignm identity: | 84 |
Alignm E-value: | 1e-24 |
Alignm gaps (pig, cow): | 37, 0 |
Conread position: | 550-636 |
Cow position: | chrX:27705584-27705499 (view UCSC Genome Browser custom track) |
Alignm length: | 87 |
Alignm identity: | 76 |
Alignm E-value: | 8e-21 |
Alignm gaps (pig, cow): | 22, 0 |
Show alignments to all cow chromosomes.