Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011J04.3 |
| Conread position: | 1-176 |
| Cow position: | chr1:83147125-83146945 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1-371 |
| Cow position: | chr1:39065378-39065758 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 88 |
| Conread position: | 1-371 |
| Cow position: | chr1:77791350-77791739 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 27 |
| Conread position: | 1-386 |
| Cow position: | chr1:69304104-69303724 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 272 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 2-314 |
| Cow position: | chr1:49985519-49985215 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 72, 117 |
| Conread position: | 3-371 |
| Cow position: | chr1:73500726-73500339 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 266 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 69, 159 |
| Conread position: | 12-194 |
| Cow position: | chr1:4036172-4035990 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 57, 11 |
| Conread position: | 12-386 |
| Cow position: | chr1:12066940-12066576 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 261 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 50, 101 |
| Conread position: | 12-386 |
| Cow position: | chr1:47788403-47788784 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 12-386 |
| Cow position: | chr1:60416688-60417068 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 53 |
| Conread position: | 12-397 |
| Cow position: | chr1:61717465-61717862 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 31-371 |
| Cow position: | chr1:92905364-92905725 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 93, 349 |
| Conread position: | 33-386 |
| Cow position: | chr1:10709651-10709279 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 353 |
| Conread position: | 33-386 |
| Cow position: | chr1:84596112-84595736 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 342 |
| Conread position: | 49-371 |
| Cow position: | chr1:20260609-20260289 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 72-385 |
| Cow position: | chr1:54122433-54122122 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 50, 29 |
| Conread position: | 102-378 |
| Cow position: | chr1:85846521-85846803 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 22, 152 |
| Conread position: | 183-371 |
| Cow position: | chr1:40726421-40726612 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 53 |
| Conread position: | 183-371 |
| Cow position: | chr1:61704702-61704880 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 183-372 |
| Cow position: | chr1:85639484-85639296 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 38, 60 |
| Conread position: | 183-386 |
| Cow position: | chr1:89893685-89893888 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 175, 59 |
| Conread position: | 186-368 |
| Cow position: | chr1:10957627-10957444 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 186-386 |
| Cow position: | chr1:5993888-5993674 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 10, 15 |
| Conread position: | 186-389 |
| Cow position: | chr1:3015677-3015884 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 186-389 |
| Cow position: | chr1:5381506-5381315 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 172, 39 |
| Conread position: | 192-356 |
| Cow position: | chr1:102533267-102533104 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 203-339 |
| Cow position: | chr1:83146889-83146747 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 215-364 |
| Cow position: | chr1:88336843-88336694 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-371 |
| Cow position: | chr1:54598391-54598246 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-370 |
| Cow position: | chr1:92039055-92038916 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 230-371 |
| Cow position: | chr1:99248666-99248806 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 69, 52 |
| Conread position: | 230-386 |
| Cow position: | chr1:100500431-100500588 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 135, 0 |
| Conread position: | 265-389 |
| Cow position: | chr1:92959700-92959818 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 102 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 268-389 |
| Cow position: | chr1:62812953-62812831 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 273-386 |
| Cow position: | chr1:77822565-77822452 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 284-386 |
| Cow position: | chr1:4035665-4035563 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 84 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 837-999 |
| Cow position: | chr1:261756-261594 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 73 |
| Conread position: | 851-994 |
| Cow position: | chr1:4412204-4412345 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
Show alignments to all cow chromosomes.