Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011J04.3 |
| Conread position: | 1-182 |
| Cow position: | chr11:20722025-20721838 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 54, 91 |
| Conread position: | 2-341 |
| Cow position: | chr11:5197921-5197600 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 2-371 |
| Cow position: | chr11:1608470-1608095 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 18 |
| Conread position: | 2-386 |
| Cow position: | chr11:53783191-53782788 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 80, 265 |
| Conread position: | 3-371 |
| Cow position: | chr11:42120185-42120554 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 66 |
| Conread position: | 3-386 |
| Cow position: | chr11:70665148-70664752 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 120, 66 |
| Conread position: | 7-317 |
| Cow position: | chr11:68450531-68450198 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 145, 12 |
| Conread position: | 11-364 |
| Cow position: | chr11:52594891-52594549 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 148, 25 |
| Conread position: | 12-336 |
| Cow position: | chr11:2079179-2078846 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 240 |
| Conread position: | 13-390 |
| Cow position: | chr11:72953781-72953394 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 8, 208 |
| Conread position: | 20-371 |
| Cow position: | chr11:36164679-36165053 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 240 |
| Conread position: | 21-370 |
| Cow position: | chr11:78019283-78019613 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 102, 133 |
| Conread position: | 23-386 |
| Cow position: | chr11:39076033-39075662 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 24-182 |
| Cow position: | chr11:25651555-25651397 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 99, 22 |
| Conread position: | 33-386 |
| Cow position: | chr11:35647582-35647219 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 28, 167 |
| Conread position: | 67-371 |
| Cow position: | chr11:1690289-1690600 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 29 |
| Conread position: | 81-370 |
| Cow position: | chr11:2701772-2701476 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 97-371 |
| Cow position: | chr11:2856552-2856832 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 109-371 |
| Cow position: | chr11:65404280-65404552 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 21, 128 |
| Conread position: | 125-386 |
| Cow position: | chr11:42240362-42240619 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 183-356 |
| Cow position: | chr11:63986919-63987092 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 183-374 |
| Cow position: | chr11:1296516-1296323 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 183-386 |
| Cow position: | chr11:47746470-47746679 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 97 |
| Conread position: | 183-386 |
| Cow position: | chr11:63658775-63658565 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 185-371 |
| Cow position: | chr11:63990433-63990617 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 134, 52 |
| Conread position: | 187-387 |
| Cow position: | chr11:60138676-60138478 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 202-364 |
| Cow position: | chr11:10105942-10106107 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 30, 41 |
| Conread position: | 219-372 |
| Cow position: | chr11:82115065-82115218 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 231-396 |
| Cow position: | chr11:25651215-25651048 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 142, 127 |
| Conread position: | 242-386 |
| Cow position: | chr11:37164252-37164107 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 735-993 |
| Cow position: | chr11:22401875-22401620 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 29, 73 |
| Conread position: | 858-994 |
| Cow position: | chr11:52268066-52267931 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 102, 49 |
Show alignments to all cow chromosomes.