Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011J04.3 |
| Conread position: | 1-171 |
| Cow position: | chr18:43622987-43622814 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 121 |
| Conread position: | 1-378 |
| Cow position: | chr18:36132227-36131868 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 63, 12 |
| Conread position: | 1-386 |
| Cow position: | chr18:56263840-56263469 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 173 |
| Conread position: | 1-746 |
| Cow position: | chr18:50044491-50045227 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 555 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 2-305 |
| Cow position: | chr18:19420947-19421243 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 114, 87 |
| Conread position: | 2-371 |
| Cow position: | chr18:35513600-35513223 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 75 |
| Conread position: | 8-374 |
| Cow position: | chr18:29654640-29654264 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 261 |
| Conread position: | 12-143 |
| Cow position: | chr18:35863529-35863393 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 12-304 |
| Cow position: | chr18:703981-704285 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 47, 61 |
| Conread position: | 12-386 |
| Cow position: | chr18:16096472-16096092 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 12-386 |
| Cow position: | chr18:16370827-16370437 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 49, 113 |
| Conread position: | 13-383 |
| Cow position: | chr18:35039442-35039040 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 8, 102 |
| Conread position: | 13-386 |
| Cow position: | chr18:34430767-34431167 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 283 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 19, 152 |
| Conread position: | 17-185 |
| Cow position: | chr18:16085734-16085904 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 23-306 |
| Cow position: | chr18:45116121-45115837 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 44, 166 |
| Conread position: | 23-385 |
| Cow position: | chr18:2787843-2788209 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 34 |
| Conread position: | 30-386 |
| Cow position: | chr18:22185971-22185599 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 31-283 |
| Cow position: | chr18:51021620-51021864 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 153, 74 |
| Conread position: | 35-331 |
| Cow position: | chr18:49974055-49974373 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 33, 88 |
| Conread position: | 37-370 |
| Cow position: | chr18:1882828-1883173 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 116 |
| Conread position: | 41-351 |
| Cow position: | chr18:46025503-46025164 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 242 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 28, 176 |
| Conread position: | 63-493 |
| Cow position: | chr18:37166087-37165648 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 61, 95 |
| Conread position: | 78-353 |
| Cow position: | chr18:35946117-35945842 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 65 |
| Conread position: | 127-382 |
| Cow position: | chr18:12260112-12259852 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 63, 122 |
| Conread position: | 128-371 |
| Cow position: | chr18:39193306-39193559 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 192 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 50, 79 |
| Conread position: | 148-371 |
| Cow position: | chr18:44248972-44248754 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 70 |
| Conread position: | 182-343 |
| Cow position: | chr18:53659630-53659783 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 183-371 |
| Cow position: | chr18:39192381-39192570 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 176 |
| Conread position: | 183-382 |
| Cow position: | chr18:42730801-42731008 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 38, 61 |
| Conread position: | 183-386 |
| Cow position: | chr18:35861851-35861647 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 199-371 |
| Cow position: | chr18:39278284-39278450 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 203-386 |
| Cow position: | chr18:12290114-12289932 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 226-370 |
| Cow position: | chr18:54382652-54382511 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 90, 41 |
| Conread position: | 230-371 |
| Cow position: | chr18:22616038-22616178 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 107, 12 |
| Conread position: | 230-386 |
| Cow position: | chr18:16086002-16086153 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 150, 71 |
| Conread position: | 230-393 |
| Cow position: | chr18:39194437-39194602 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 89, 44 |
| Conread position: | 243-386 |
| Cow position: | chr18:48859066-48858926 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 25 |
| Conread position: | 747-959 |
| Cow position: | chr18:50045463-50045674 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 153, 0 |
Show alignments to all cow chromosomes.