Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011J04.3 |
| Conread position: | 1-182 |
| Cow position: | chr21:7780635-7780820 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 149 |
| Conread position: | 1-185 |
| Cow position: | chr21:35094501-35094692 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-201 |
| Cow position: | chr21:14776170-14776373 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 64, 109 |
| Conread position: | 1-371 |
| Cow position: | chr21:11362108-11361731 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 68 |
| Conread position: | 2-185 |
| Cow position: | chr21:5542054-5542238 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 121, 87 |
| Conread position: | 2-361 |
| Cow position: | chr21:25522141-25521774 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 62 |
| Conread position: | 3-371 |
| Cow position: | chr21:17991433-17991059 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 12-182 |
| Cow position: | chr21:41591286-41591453 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 110, 26 |
| Conread position: | 12-371 |
| Cow position: | chr21:20029572-20029941 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 49, 107 |
| Conread position: | 13-285 |
| Cow position: | chr21:42593233-42592942 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 8, 54 |
| Conread position: | 23-185 |
| Cow position: | chr21:24986587-24986755 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 41, 132 |
| Conread position: | 23-185 |
| Cow position: | chr21:35146730-35146570 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 24-386 |
| Cow position: | chr21:27565666-27565302 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 41 |
| Conread position: | 24-411 |
| Cow position: | chr21:36812263-36812660 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 191 |
| Conread position: | 29-364 |
| Cow position: | chr21:17907556-17907901 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 36-368 |
| Cow position: | chr21:49628677-49629011 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 23, 39 |
| Conread position: | 40-299 |
| Cow position: | chr21:4755254-4754990 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 84, 27 |
| Conread position: | 67-364 |
| Cow position: | chr21:249022-248717 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 51 |
| Conread position: | 92-386 |
| Cow position: | chr21:7618087-7618394 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 163-370 |
| Cow position: | chr21:40817394-40817187 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 10, 39 |
| Conread position: | 183-361 |
| Cow position: | chr21:49076244-49076419 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 183-370 |
| Cow position: | chr21:34062159-34061971 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 162, 43 |
| Conread position: | 183-371 |
| Cow position: | chr21:7780851-7781038 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 33, 128 |
| Conread position: | 183-371 |
| Cow position: | chr21:18154136-18154327 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 36, 180 |
| Conread position: | 183-372 |
| Cow position: | chr21:3517252-3517061 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 33, 93 |
| Conread position: | 183-384 |
| Cow position: | chr21:18132379-18132182 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 38, 62 |
| Conread position: | 183-386 |
| Cow position: | chr21:41591484-41591689 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 186-379 |
| Cow position: | chr21:23903623-23903814 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 172, 56 |
| Conread position: | 186-385 |
| Cow position: | chr21:35146539-35146339 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 187-371 |
| Cow position: | chr21:24986805-24986988 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 93, 39 |
| Conread position: | 215-389 |
| Cow position: | chr21:10276935-10276761 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 151, 27 |
| Conread position: | 226-386 |
| Cow position: | chr21:35094780-35094942 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 230-386 |
| Cow position: | chr21:14776645-14776792 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 230-387 |
| Cow position: | chr21:5026469-5026316 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 242-371 |
| Cow position: | chr21:3494851-3494723 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 244-371 |
| Cow position: | chr21:5542567-5542695 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 484-649 |
| Cow position: | chr21:21614635-21614804 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 87 |
| Conread position: | 821-993 |
| Cow position: | chr21:14763130-14762961 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.