Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8011J04.3 |
| Conread position: | 1-371 |
| Cow position: | chr5:7413913-7414279 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 272 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 65, 108 |
| Conread position: | 1-386 |
| Cow position: | chr5:35545549-35545164 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 2-342 |
| Cow position: | chr5:20014027-20014376 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 253 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 122, 60 |
| Conread position: | 2-371 |
| Cow position: | chr5:10885178-10884810 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 116, 46 |
| Conread position: | 10-386 |
| Cow position: | chr5:35712448-35712049 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 22, 254 |
| Conread position: | 12-272 |
| Cow position: | chr5:20744327-20744600 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 45, 241 |
| Conread position: | 20-371 |
| Cow position: | chr5:27409345-27409679 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 154 |
| Conread position: | 23-378 |
| Cow position: | chr5:4426835-4427187 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 108, 53 |
| Conread position: | 24-388 |
| Cow position: | chr5:53959156-53958775 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 97 |
| Conread position: | 30-381 |
| Cow position: | chr5:20658793-20658435 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 168 |
| Conread position: | 31-185 |
| Cow position: | chr5:49082701-49082546 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 93, 87 |
| Conread position: | 33-384 |
| Cow position: | chr5:65670913-65670556 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 33-386 |
| Cow position: | chr5:43147293-43146941 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 51-371 |
| Cow position: | chr5:4263284-4262955 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 25, 226 |
| Conread position: | 70-386 |
| Cow position: | chr5:41514077-41514405 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 188 |
| Conread position: | 90-386 |
| Cow position: | chr5:57408686-57408994 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 219 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 122-389 |
| Cow position: | chr5:35642715-35642975 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 10, 61 |
| Conread position: | 183-371 |
| Cow position: | chr5:64173113-64173303 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 183-372 |
| Cow position: | chr5:74674829-74674643 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 183-373 |
| Cow position: | chr5:7868133-7868322 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 183-386 |
| Cow position: | chr5:44766225-44766430 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 136, 52 |
| Conread position: | 203-364 |
| Cow position: | chr5:63125835-63125674 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 94, 156 |
| Conread position: | 226-353 |
| Cow position: | chr5:49088696-49088823 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 226-371 |
| Cow position: | chr5:34182232-34182094 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 269-386 |
| Cow position: | chr5:55349063-55349178 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 277-371 |
| Cow position: | chr5:63581718-63581812 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 81 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 486-653 |
| Cow position: | chr5:3983944-3983772 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 747-994 |
| Cow position: | chr5:3983220-3982980 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 85 |
Show alignments to all cow chromosomes.