Cow genome map

Conread name: Ss1.1-Pig3-SRG8015P11.5

Conread position: 78-217
Cow position: chr1:32965039-32964899 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 104
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 78-220
Cow position: chr1:55117921-55117778 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 39, 0

Conread position: 79-226
Cow position: chr1:48321429-48321575 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 61, 21

Conread position: 81-219
Cow position: chr1:98412861-98412999 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 39, 133

Conread position: 81-220
Cow position: chr1:638368-638221 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 36, 0

Conread position: 81-221
Cow position: chr1:75185104-75184963 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 81-226
Cow position: chr1:89776678-89776822 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 86-218
Cow position: chr1:5655272-5655404 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 30, 121

Conread position: 89-219
Cow position: chr1:77942709-77942839 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 26, 59

Conread position: 92-519
Cow position: chr1:81642045-81642468 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 58

Conread position: 115-225
Cow position: chr1:29107368-29107478 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 128-218
Cow position: chr1:16523671-16523581 (view UCSC Genome Browser custom track)
Alignm length: 91
Alignm identity: 78
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 229-528
Cow position: chr1:69722370-69722075 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 222
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 51, 77

Conread position: 259-528
Cow position: chr1:48321640-48321897 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 203
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 22

Conread position: 276-528
Cow position: chr1:5634176-5633926 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 62, 5

Conread position: 276-528
Cow position: chr1:90402888-90403140 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 105, 5

Conread position: 289-528
Cow position: chr1:78026998-78027239 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 169
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 92, 134

Conread position: 324-528
Cow position: chr1:22590093-22589886 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 17, 101

Conread position: 326-523
Cow position: chr1:11381908-11382096 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 0

Conread position: 326-525
Cow position: chr1:75184836-75184642 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 53, 97

Conread position: 326-528
Cow position: chr1:5664894-5665096 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 39

Conread position: 326-528
Cow position: chr1:97770445-97770246 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 160
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 51, 92

Conread position: 326-528
Cow position: chr1:101441753-101441956 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 97

Conread position: 327-527
Cow position: chr1:29107649-29107854 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 33, 97

Conread position: 330-528
Cow position: chr1:101625350-101625151 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 147
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 52, 93

Conread position: 336-527
Cow position: chr1:55121030-55121214 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 33, 61

Conread position: 337-528
Cow position: chr1:80314702-80314511 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 143
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 126, 85

Conread position: 340-528
Cow position: chr1:86302145-86302328 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 138
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 43, 14

Conread position: 341-528
Cow position: chr1:57810003-57809814 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 44, 84

Conread position: 348-517
Cow position: chr1:31977946-31977776 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 133
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 22, 67

Conread position: 349-528
Cow position: chr1:60311306-60311487 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 135
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 29, 76

Conread position: 362-528
Cow position: chr1:27958719-27958886 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 21, 60

Conread position: 364-520
Cow position: chr1:10935013-10935171 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 23, 59

Conread position: 370-519
Cow position: chr1:47366931-47367080 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 91, 51

Conread position: 384-526
Cow position: chr1:55124749-55124885 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 37, 0

Conread position: 384-528
Cow position: chr1:228868-228723 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 75, 37

Conread position: 389-520
Cow position: chr1:16522507-16522375 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 72, 27

Conread position: 392-528
Cow position: chr1:81112809-81112944 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 105
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 17, 30

Conread position: 399-527
Cow position: chr1:32496036-32495910 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 0

Conread position: 399-528
Cow position: chr1:91025891-91025766 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 400-528
Cow position: chr1:47365077-47364953 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 401-528
Cow position: chr1:35434324-35434199 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 98
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 402-528
Cow position: chr1:7486804-7486679 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 53, 18

Conread position: 407-528
Cow position: chr1:97469423-97469303 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 63, 14

Show alignments to all cow chromosomes.