Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8015P11.5 |
| Conread position: | 78-217 |
| Cow position: | chr1:32965039-32964899 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 78-220 |
| Cow position: | chr1:55117921-55117778 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 79-226 |
| Cow position: | chr1:48321429-48321575 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 61, 21 |
| Conread position: | 81-219 |
| Cow position: | chr1:98412861-98412999 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 133 |
| Conread position: | 81-220 |
| Cow position: | chr1:638368-638221 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 81-221 |
| Cow position: | chr1:75185104-75184963 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 81-226 |
| Cow position: | chr1:89776678-89776822 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 86-218 |
| Cow position: | chr1:5655272-5655404 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 121 |
| Conread position: | 89-219 |
| Cow position: | chr1:77942709-77942839 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 59 |
| Conread position: | 92-519 |
| Cow position: | chr1:81642045-81642468 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 58 |
| Conread position: | 115-225 |
| Cow position: | chr1:29107368-29107478 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-218 |
| Cow position: | chr1:16523671-16523581 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 78 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 229-528 |
| Cow position: | chr1:69722370-69722075 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 222 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 51, 77 |
| Conread position: | 259-528 |
| Cow position: | chr1:48321640-48321897 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 119, 22 |
| Conread position: | 276-528 |
| Cow position: | chr1:5634176-5633926 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 62, 5 |
| Conread position: | 276-528 |
| Cow position: | chr1:90402888-90403140 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 105, 5 |
| Conread position: | 289-528 |
| Cow position: | chr1:78026998-78027239 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 92, 134 |
| Conread position: | 324-528 |
| Cow position: | chr1:22590093-22589886 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 101 |
| Conread position: | 326-523 |
| Cow position: | chr1:11381908-11382096 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 326-525 |
| Cow position: | chr1:75184836-75184642 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 326-528 |
| Cow position: | chr1:5664894-5665096 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 39 |
| Conread position: | 326-528 |
| Cow position: | chr1:97770445-97770246 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 51, 92 |
| Conread position: | 326-528 |
| Cow position: | chr1:101441753-101441956 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 53, 97 |
| Conread position: | 327-527 |
| Cow position: | chr1:29107649-29107854 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 97 |
| Conread position: | 330-528 |
| Cow position: | chr1:101625350-101625151 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 93 |
| Conread position: | 336-527 |
| Cow position: | chr1:55121030-55121214 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 33, 61 |
| Conread position: | 337-528 |
| Cow position: | chr1:80314702-80314511 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 126, 85 |
| Conread position: | 340-528 |
| Cow position: | chr1:86302145-86302328 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 43, 14 |
| Conread position: | 341-528 |
| Cow position: | chr1:57810003-57809814 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 348-517 |
| Cow position: | chr1:31977946-31977776 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 349-528 |
| Cow position: | chr1:60311306-60311487 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 29, 76 |
| Conread position: | 362-528 |
| Cow position: | chr1:27958719-27958886 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 60 |
| Conread position: | 364-520 |
| Cow position: | chr1:10935013-10935171 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 59 |
| Conread position: | 370-519 |
| Cow position: | chr1:47366931-47367080 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 91, 51 |
| Conread position: | 384-526 |
| Cow position: | chr1:55124749-55124885 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 384-528 |
| Cow position: | chr1:228868-228723 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 389-520 |
| Cow position: | chr1:16522507-16522375 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 72, 27 |
| Conread position: | 392-528 |
| Cow position: | chr1:81112809-81112944 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 399-527 |
| Cow position: | chr1:32496036-32495910 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 399-528 |
| Cow position: | chr1:91025891-91025766 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 400-528 |
| Cow position: | chr1:47365077-47364953 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 401-528 |
| Cow position: | chr1:35434324-35434199 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 402-528 |
| Cow position: | chr1:7486804-7486679 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 407-528 |
| Cow position: | chr1:97469423-97469303 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 14 |
Show alignments to all cow chromosomes.