Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8015P11.5 |
| Conread position: | 78-219 |
| Cow position: | chr11:37329953-37330095 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 79-219 |
| Cow position: | chr11:39234586-39234728 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 81-221 |
| Cow position: | chr11:881673-881532 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 81-501 |
| Cow position: | chr11:63678224-63678662 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 109 |
| Conread position: | 84-220 |
| Cow position: | chr11:37356367-37356229 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 87-317 |
| Cow position: | chr11:42057971-42058214 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 89-220 |
| Cow position: | chr11:9806582-9806449 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 92-192 |
| Cow position: | chr11:5252511-5252410 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 92-220 |
| Cow position: | chr11:5144523-5144395 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 26, 122 |
| Conread position: | 92-225 |
| Cow position: | chr11:41483421-41483287 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 25, 98 |
| Conread position: | 92-226 |
| Cow position: | chr11:36901494-36901362 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 25, 14 |
| Conread position: | 92-227 |
| Cow position: | chr11:19703197-19703332 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 23, 55 |
| Conread position: | 96-291 |
| Cow position: | chr11:16283287-16283479 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 103 |
| Conread position: | 104-235 |
| Cow position: | chr11:72347161-72347029 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 106-220 |
| Cow position: | chr11:6604792-6604906 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 18, 108 |
| Conread position: | 119-226 |
| Cow position: | chr11:32390979-32391085 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 128-528 |
| Cow position: | chr11:4665067-4664688 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 66 |
| Conread position: | 258-519 |
| Cow position: | chr11:9804831-9804588 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 204, 62 |
| Conread position: | 276-528 |
| Cow position: | chr11:45491536-45491296 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 183, 6 |
| Conread position: | 276-528 |
| Cow position: | chr11:70245464-70245718 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 58, 5 |
| Conread position: | 279-528 |
| Cow position: | chr11:37356115-37355872 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 52 |
| Conread position: | 281-528 |
| Cow position: | chr11:66673745-66673496 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 56, 187 |
| Conread position: | 296-528 |
| Cow position: | chr11:16285186-16285433 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 140 |
| Conread position: | 304-512 |
| Cow position: | chr11:39243625-39243837 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 6, 120 |
| Conread position: | 310-527 |
| Cow position: | chr11:37729331-37729545 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 7 |
| Conread position: | 317-520 |
| Cow position: | chr11:40011978-40011780 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 326-528 |
| Cow position: | chr11:39241528-39241731 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 327-528 |
| Cow position: | chr11:37398831-37398628 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 51, 97 |
| Conread position: | 384-528 |
| Cow position: | chr11:42058243-42058385 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 407-526 |
| Cow position: | chr11:75202727-75202842 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 417-526 |
| Cow position: | chr11:39204851-39204959 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 417-528 |
| Cow position: | chr11:36443882-36443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 420-527 |
| Cow position: | chr11:7548796-7548690 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.