Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8015P11.5 |
| Conread position: | 81-192 |
| Cow position: | chr16:54409246-54409357 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 81-243 |
| Cow position: | chr16:200293-200457 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 81-528 |
| Cow position: | chr16:20984834-20985287 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 169 |
| Conread position: | 86-212 |
| Cow position: | chr16:34131577-34131450 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 89-220 |
| Cow position: | chr16:23384398-23384532 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 28, 120 |
| Conread position: | 92-220 |
| Cow position: | chr16:8786864-8786736 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 23, 94 |
| Conread position: | 92-226 |
| Cow position: | chr16:33709607-33709739 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 92-234 |
| Cow position: | chr16:27974774-27974627 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 95-226 |
| Cow position: | chr16:26065509-26065642 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 102 |
| Conread position: | 96-220 |
| Cow position: | chr16:33147635-33147759 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 21, 118 |
| Conread position: | 222-523 |
| Cow position: | chr16:15098985-15098693 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 157, 20 |
| Conread position: | 229-528 |
| Cow position: | chr16:7179828-7179545 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 11, 59 |
| Conread position: | 231-528 |
| Cow position: | chr16:46543892-46543613 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 130, 61 |
| Conread position: | 234-419 |
| Cow position: | chr16:26185233-26185050 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 143, 76 |
| Conread position: | 242-526 |
| Cow position: | chr16:30563695-30563956 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 136, 40 |
| Conread position: | 242-528 |
| Cow position: | chr16:31703932-31704193 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 136, 40 |
| Conread position: | 242-528 |
| Cow position: | chr16:49778690-49778421 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 137, 77 |
| Conread position: | 245-528 |
| Cow position: | chr16:54409601-54409875 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 245-528 |
| Cow position: | chr16:54632369-54632627 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 83 |
| Conread position: | 245-528 |
| Cow position: | chr16:54635221-54635479 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 136, 83 |
| Conread position: | 259-519 |
| Cow position: | chr16:2711003-2711253 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 259-528 |
| Cow position: | chr16:3892130-3892396 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 259-528 |
| Cow position: | chr16:33147849-33148111 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 276-526 |
| Cow position: | chr16:45781178-45781426 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 58, 8 |
| Conread position: | 296-516 |
| Cow position: | chr16:23384846-23385062 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 165, 25 |
| Conread position: | 332-528 |
| Cow position: | chr16:32165486-32165683 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 337-528 |
| Cow position: | chr16:12044619-12044433 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 20 |
| Conread position: | 341-517 |
| Cow position: | chr16:44523022-44523197 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 399-528 |
| Cow position: | chr16:10444565-10444690 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 424-526 |
| Cow position: | chr16:26184841-26184737 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 33, 68 |
Show alignments to all cow chromosomes.