Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8015P11.5 |
| Conread position: | 70-225 |
| Cow position: | chrX:38674729-38674888 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 79-220 |
| Cow position: | chrX:27529443-27529584 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-190 |
| Cow position: | chrX:36874064-36874174 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 81-452 |
| Cow position: | chrX:38740975-38741358 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 263 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 156, 201 |
| Conread position: | 85-226 |
| Cow position: | chrX:34767951-34767808 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 113 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 86-224 |
| Cow position: | chrX:37251326-37251468 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 89-419 |
| Cow position: | chrX:29145346-29145694 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 256 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 40, 259 |
| Conread position: | 89-470 |
| Cow position: | chrX:10062092-10062484 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 251 |
| Conread position: | 92-217 |
| Cow position: | chrX:3450949-3450823 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 92-225 |
| Cow position: | chrX:38129386-38129251 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 92-228 |
| Cow position: | chrX:33158915-33159054 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 95-220 |
| Cow position: | chrX:34635673-34635547 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-226 |
| Cow position: | chrX:16893456-16893584 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 20, 84 |
| Conread position: | 96-226 |
| Cow position: | chrX:40315713-40315845 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 103 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 28, 112 |
| Conread position: | 226-526 |
| Cow position: | chrX:29372438-29372731 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 102 |
| Conread position: | 234-493 |
| Cow position: | chrX:36878145-36878397 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 145, 84 |
| Conread position: | 261-528 |
| Cow position: | chrX:35981767-35982027 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 19, 45 |
| Conread position: | 276-516 |
| Cow position: | chrX:14049478-14049256 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 276-527 |
| Cow position: | chrX:23323104-23322858 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 192 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 104, 5 |
| Conread position: | 309-453 |
| Cow position: | chrX:27529714-27529858 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 72, 113 |
| Conread position: | 328-509 |
| Cow position: | chrX:23322294-23322477 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 95 |
| Conread position: | 341-528 |
| Cow position: | chrX:25179680-25179865 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 381-528 |
| Cow position: | chrX:29227055-29227201 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 80, 22 |
| Conread position: | 399-524 |
| Cow position: | chrX:13600756-13600633 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 399-526 |
| Cow position: | chrX:34767596-34767471 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 400-528 |
| Cow position: | chrX:16895782-16895655 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 40 |
| Conread position: | 401-527 |
| Cow position: | chrX:31910564-31910440 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.