Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8017B08.3 |
| Conread position: | 1-289 |
| Cow position: | chr14:663401-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 1-339 |
| Cow position: | chr14:434064-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 124, 148 |
| Conread position: | 1-410 |
| Cow position: | chr14:25836805-25837217 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 1-486 |
| Cow position: | chr14:3100835-3100347 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 157, 230 |
| Conread position: | 1-578 |
| Cow position: | chr14:3155900-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 1-584 |
| Cow position: | chr14:25860194-25860783 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 365 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 127, 225 |
| Conread position: | 1-586 |
| Cow position: | chr14:3127852-3127260 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 148 |
| Conread position: | 1-593 |
| Cow position: | chr14:25877245-25877843 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 225 |
| Conread position: | 1-634 |
| Cow position: | chr14:25836553-25837192 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 380 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 122, 225 |
| Conread position: | 1-651 |
| Cow position: | chr14:447591-448247 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 553 |
| Conread position: | 1-669 |
| Cow position: | chr14:3080340-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 146 |
| Conread position: | 1-696 |
| Cow position: | chr14:680561-681262 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 74 |
| Conread position: | 1-696 |
| Cow position: | chr14:3101417-3100722 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 424 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 79, 90 |
| Conread position: | 1-707 |
| Cow position: | chr14:3061655-3060943 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 216 |
| Conread position: | 1-713 |
| Cow position: | chr14:3101082-3100369 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 1-723 |
| Cow position: | chr14:25783766-25784494 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 433 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 92 |
| Conread position: | 1-723 |
| Cow position: | chr14:25859522-25860250 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 436 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 1-724 |
| Cow position: | chr14:25895704-25896431 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 1-737 |
| Cow position: | chr14:3155411-3156138 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 306 |
| Conread position: | 1-743 |
| Cow position: | chr14:25859438-25860186 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 441 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 124, 400 |
| Conread position: | 1-743 |
| Cow position: | chr14:25877077-25877825 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 445 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 127, 400 |
| Conread position: | 1-744 |
| Cow position: | chr14:3128020-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 555 |
| Conread position: | 1-745 |
| Cow position: | chr14:680225-680975 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 1-745 |
| Cow position: | chr14:3061571-3060821 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-745 |
| Cow position: | chr14:3080424-3079674 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 92 |
| Conread position: | 1-745 |
| Cow position: | chr14:3080508-3079758 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 148 |
| Conread position: | 1-745 |
| Cow position: | chr14:3080760-3080010 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 296 |
| Conread position: | 1-745 |
| Cow position: | chr14:3080844-3080094 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 148 |
| Conread position: | 1-745 |
| Cow position: | chr14:3128104-3127354 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 428 |
| Conread position: | 1-745 |
| Cow position: | chr14:3155747-3156482 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 411, 89 |
| Conread position: | 1-745 |
| Cow position: | chr14:25836049-25836799 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 445 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 1-745 |
| Cow position: | chr14:25836385-25837135 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 1-745 |
| Cow position: | chr14:25859858-25860608 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 1-745 |
| Cow position: | chr14:25876909-25877659 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 1-745 |
| Cow position: | chr14:25895200-25895950 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 399 |
| Conread position: | 1-745 |
| Cow position: | chr14:25895368-25896118 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-745 |
| Cow position: | chr14:25895536-25896286 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 323 |
| Conread position: | 1-746 |
| Cow position: | chr14:3101166-3100420 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 106 |
| Conread position: | 1-749 |
| Cow position: | chr14:3061403-3060649 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 2-743 |
| Cow position: | chr14:25836134-25836881 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 63 |
| Conread position: | 3-588 |
| Cow position: | chr14:433814-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 393 |
| Conread position: | 4-716 |
| Cow position: | chr14:3080925-3080207 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 16-711 |
| Cow position: | chr14:25894882-25895580 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 39 |
| Conread position: | 18-746 |
| Cow position: | chr14:25876422-25877156 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 47 |
| Conread position: | 23-745 |
| Cow position: | chr14:680499-681227 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 23-745 |
| Cow position: | chr14:3080990-3080262 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 25-716 |
| Cow position: | chr14:25836493-25837190 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 375 |
| Conread position: | 25-734 |
| Cow position: | chr14:25860050-25860765 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 427 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 103, 287 |
| Conread position: | 60-745 |
| Cow position: | chr14:3081038-3080346 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 76 |
| Conread position: | 63-734 |
| Cow position: | chr14:447569-448246 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 238 |
| Conread position: | 64-706 |
| Cow position: | chr14:25783325-25783973 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 375 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 587 |
| Conread position: | 64-707 |
| Cow position: | chr14:25795117-25794468 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 366 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 71, 253 |
| Conread position: | 66-663 |
| Cow position: | chr14:3155881-3156484 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 70-538 |
| Cow position: | chr14:25910818-25911292 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 288 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 57, 234 |
| Conread position: | 82-745 |
| Cow position: | chr14:3155408-3156062 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 406 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 354 |
| Conread position: | 128-422 |
| Cow position: | chr14:663439-663145 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 185 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 75, 70 |
| Conread position: | 129-373 |
| Cow position: | chr14:663354-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 129-724 |
| Cow position: | chr14:3061692-3061095 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 402 |
| Conread position: | 138-745 |
| Cow position: | chr14:447563-448173 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 281 |
| Conread position: | 157-745 |
| Cow position: | chr14:3128113-3127522 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 225 |
| Conread position: | 162-744 |
| Cow position: | chr14:433808-434393 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 0 |
| Conread position: | 163-589 |
| Cow position: | chr14:3155408-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 298, 316 |
| Conread position: | 163-737 |
| Cow position: | chr14:3061742-3061165 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 66 |
| Conread position: | 163-745 |
| Cow position: | chr14:25894945-25895530 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 224 |
| Conread position: | 164-745 |
| Cow position: | chr14:680143-680723 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 16 |
| Conread position: | 165-745 |
| Cow position: | chr14:25836048-25836631 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 170-716 |
| Cow position: | chr14:447511-448060 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 301 |
| Conread position: | 177-745 |
| Cow position: | chr14:25876332-25876903 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 337 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 180-538 |
| Cow position: | chr14:663471-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 209, 205 |
| Conread position: | 189-724 |
| Cow position: | chr14:25859293-25859831 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 287, 0 |
| Conread position: | 190-745 |
| Cow position: | chr14:3128164-3127606 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 116 |
| Conread position: | 212-745 |
| Cow position: | chr14:433774-434310 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 226-704 |
| Cow position: | chr14:25910809-25911290 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 305 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 162, 171 |
| Conread position: | 229-743 |
| Cow position: | chr14:25783325-25783842 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 157, 148 |
| Conread position: | 234-671 |
| Cow position: | chr14:3155395-3155835 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 241-745 |
| Cow position: | chr14:25859261-25859768 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 244-744 |
| Cow position: | chr14:3155324-3155824 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 45 |
| Conread position: | 246-745 |
| Cow position: | chr14:3061743-3061241 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 217, 236 |
| Conread position: | 254-622 |
| Cow position: | chr14:663480-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 168, 6 |
| Conread position: | 334-746 |
| Cow position: | chr14:25836049-25836464 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 503-745 |
| Cow position: | chr14:447511-447753 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.