Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8017B08.3 |
| Conread position: | 1-424 |
| Cow position: | chr22:12418858-12418432 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 1-594 |
| Cow position: | chr22:11640859-11641458 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 1-609 |
| Cow position: | chr22:12475884-12475268 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 359 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 127, 232 |
| Conread position: | 1-672 |
| Cow position: | chr22:46654182-46654860 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 397 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 1-695 |
| Cow position: | chr22:14429815-14430515 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 413 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 1-716 |
| Cow position: | chr22:12476052-12475331 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 434 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 142, 127 |
| Conread position: | 1-737 |
| Cow position: | chr22:12458523-12457781 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 428 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 128, 537 |
| Conread position: | 1-745 |
| Cow position: | chr22:12399591-12398841 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 218 |
| Conread position: | 1-745 |
| Cow position: | chr22:12476304-12475554 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 444 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 79, 85 |
| Conread position: | 1-745 |
| Cow position: | chr22:12499207-12499957 (view UCSC Genome Browser custom track) |
| Alignm length: | 754 |
| Alignm identity: | 442 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 142, 127 |
| Conread position: | 1-746 |
| Cow position: | chr22:12431739-12430988 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 442 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 142, 115 |
| Conread position: | 2-671 |
| Cow position: | chr22:12499292-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 386 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 126, 536 |
| Conread position: | 2-717 |
| Cow position: | chr22:11640692-11641413 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 17 |
| Conread position: | 2-745 |
| Cow position: | chr22:12419294-12418528 (view UCSC Genome Browser custom track) |
| Alignm length: | 770 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 215 |
| Conread position: | 2-745 |
| Cow position: | chr22:12458606-12457857 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 458 |
| Conread position: | 3-712 |
| Cow position: | chr22:12399757-12399042 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 425 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 124, 383 |
| Conread position: | 16-586 |
| Cow position: | chr22:12419011-12418435 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 415 |
| Conread position: | 23-745 |
| Cow position: | chr22:12432389-12431661 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 419 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 105, 511 |
| Conread position: | 25-507 |
| Cow position: | chr22:11666472-11666960 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 295 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 101, 366 |
| Conread position: | 25-588 |
| Cow position: | chr22:11701126-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 371 |
| Conread position: | 28-738 |
| Cow position: | chr22:12385640-12384922 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 431 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 102, 174 |
| Conread position: | 36-758 |
| Cow position: | chr22:12399886-12399163 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 44 |
| Conread position: | 37-748 |
| Cow position: | chr22:12431871-12431154 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 413 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 38-694 |
| Cow position: | chr22:14467928-14468591 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 389 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 165 |
| Conread position: | 45-695 |
| Cow position: | chr22:12476344-12475688 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 188 |
| Conread position: | 48-734 |
| Cow position: | chr22:12399460-12398768 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 402 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 84, 437 |
| Conread position: | 52-745 |
| Cow position: | chr22:12431520-12430821 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 409 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 92, 181 |
| Conread position: | 54-705 |
| Cow position: | chr22:14429784-14430440 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 399 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 75, 148 |
| Conread position: | 64-723 |
| Cow position: | chr22:12476409-12475744 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 399 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 93-671 |
| Cow position: | chr22:11701110-11701694 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 356 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 34, 109 |
| Conread position: | 100-769 |
| Cow position: | chr22:14429662-14430339 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 394 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 458 |
| Conread position: | 128-754 |
| Cow position: | chr22:12432449-12431818 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 366 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 101, 95 |
| Conread position: | 142-760 |
| Cow position: | chr22:46654074-46654697 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 155, 150 |
| Conread position: | 143-723 |
| Cow position: | chr22:12498932-12499515 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 343 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 265, 285 |
| Conread position: | 145-745 |
| Cow position: | chr22:11640670-11641273 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 145-746 |
| Cow position: | chr22:12385604-12384998 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 348 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 63, 70 |
| Conread position: | 163-746 |
| Cow position: | chr22:12419298-12418695 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 344 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 210, 484 |
| Conread position: | 181-670 |
| Cow position: | chr22:11666463-11666955 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 291 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 299, 268 |
| Conread position: | 181-705 |
| Cow position: | chr22:11701117-11701643 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 321 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 110, 118 |
| Conread position: | 185-744 |
| Cow position: | chr22:12419007-12418445 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 208 |
| Conread position: | 189-745 |
| Cow position: | chr22:11640630-11641189 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 213-705 |
| Cow position: | chr22:12498834-12499328 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 200, 215 |
| Conread position: | 252-712 |
| Cow position: | chr22:11701104-11701567 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 330-745 |
| Cow position: | chr22:11701098-11701516 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 83, 97 |
| Conread position: | 331-718 |
| Cow position: | chr22:11666445-11666836 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 82, 96 |
| Conread position: | 378-734 |
| Cow position: | chr22:12498915-12499274 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 473-743 |
| Cow position: | chr22:12498929-12499199 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 234, 221 |
| Conread position: | 473-746 |
| Cow position: | chr22:12476330-12476057 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 174 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 186, 181 |
Show alignments to all cow chromosomes.