Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8017B08.3 |
| Conread position: | 1-328 |
| Cow position: | chr23:24626393-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 115, 232 |
| Conread position: | 1-410 |
| Cow position: | chr23:25660320-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 248 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 1-421 |
| Cow position: | chr23:24639637-24640060 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 122, 354 |
| Conread position: | 1-451 |
| Cow position: | chr23:24639553-24640004 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 285 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 34, 44 |
| Conread position: | 1-452 |
| Cow position: | chr23:25626616-25627071 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 95, 100 |
| Conread position: | 1-568 |
| Cow position: | chr23:24547245-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 201 |
| Conread position: | 1-745 |
| Cow position: | chr23:24639217-24639967 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 183 |
| Conread position: | 2-385 |
| Cow position: | chr23:24535791-24535404 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 10-587 |
| Cow position: | chr23:24560712-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 357 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 86, 90 |
| Conread position: | 16-746 |
| Cow position: | chr23:24560874-24560138 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 84 |
| Conread position: | 25-410 |
| Cow position: | chr23:24535852-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 106, 348 |
| Conread position: | 25-449 |
| Cow position: | chr23:25626559-25626983 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 103, 28 |
| Conread position: | 37-441 |
| Cow position: | chr23:24626345-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 269 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 86, 164 |
| Conread position: | 37-745 |
| Cow position: | chr23:24639337-24640051 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 43-411 |
| Cow position: | chr23:25724084-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 55-745 |
| Cow position: | chr23:25626169-25626862 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 396 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 68, 267 |
| Conread position: | 63-691 |
| Cow position: | chr23:24639447-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 139 |
| Conread position: | 64-577 |
| Cow position: | chr23:25626514-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 310 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 32, 36 |
| Conread position: | 64-722 |
| Cow position: | chr23:25626094-25626755 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 390 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 78, 65 |
| Conread position: | 84-653 |
| Cow position: | chr23:25698658-25698081 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 343 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 235 |
| Conread position: | 85-746 |
| Cow position: | chr23:24639217-24639884 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 232 |
| Conread position: | 143-772 |
| Cow position: | chr23:24547268-24546632 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 555 |
| Conread position: | 148-705 |
| Cow position: | chr23:25660133-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 253 |
| Conread position: | 157-492 |
| Cow position: | chr23:25724051-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 254, 266 |
| Conread position: | 163-587 |
| Cow position: | chr23:24626306-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 165-745 |
| Cow position: | chr23:24522815-24522237 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 298, 28 |
| Conread position: | 220-732 |
| Cow position: | chr23:24522678-24522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 214, 68 |
| Conread position: | 229-588 |
| Cow position: | chr23:24535813-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 233, 302 |
| Conread position: | 229-745 |
| Cow position: | chr23:25626514-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 235, 73 |
| Conread position: | 243-675 |
| Cow position: | chr23:24626302-24626736 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 275 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 234, 323 |
| Conread position: | 274-671 |
| Cow position: | chr23:24535852-24535452 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 274-745 |
| Cow position: | chr23:24536020-24535546 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 280 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 182, 0 |
| Conread position: | 292-767 |
| Cow position: | chr23:24547287-24546807 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 303 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 172, 243 |
| Conread position: | 327-745 |
| Cow position: | chr23:24626302-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 137, 204 |
| Conread position: | 370-678 |
| Cow position: | chr23:24654070-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 376-769 |
| Cow position: | chr23:25724084-25723686 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 377-745 |
| Cow position: | chr23:24626268-24626639 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 397-735 |
| Cow position: | chr23:25626094-25626435 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 415-739 |
| Cow position: | chr23:25660149-25660476 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 482-745 |
| Cow position: | chr23:25660134-25660398 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 9, 213 |
| Conread position: | 513-746 |
| Cow position: | chr23:25698641-25698408 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-745 |
| Cow position: | chr23:25724102-25723880 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.