Cow genome map

Conread name: Ss1.1-Pig3-SRG8019N06.5

Conread position: 121-397
Cow position: chr12:17775027-17774743 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 196
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 105, 23

Conread position: 123-383
Cow position: chr12:39452269-39452528 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 76, 104

Conread position: 124-400
Cow position: chr12:2661185-2661468 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 208
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 21, 102

Conread position: 130-257
Cow position: chr12:13002388-13002516 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 6, 0

Conread position: 135-331
Cow position: chr12:34459878-34459676 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 50

Conread position: 136-218
Cow position: chr12:25541651-25541733 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 73
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 137-367
Cow position: chr12:7515039-7514792 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 77, 0

Conread position: 137-387
Cow position: chr12:40269867-40270103 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 182
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 169, 66

Conread position: 138-353
Cow position: chr12:26962415-26962637 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 172
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 88, 29

Conread position: 143-357
Cow position: chr12:15790258-15790048 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 157
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 163, 29

Conread position: 144-376
Cow position: chr12:23912822-23913041 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 162, 58

Conread position: 144-395
Cow position: chr12:22894360-22894121 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 229, 23

Conread position: 144-397
Cow position: chr12:29779721-29779965 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 193
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 162, 71

Conread position: 144-397
Cow position: chr12:32419188-32419422 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 162, 81

Conread position: 144-398
Cow position: chr12:45820170-45820418 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 180
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 161, 74

Conread position: 145-366
Cow position: chr12:8472536-8472762 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 153
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 156, 74

Conread position: 149-396
Cow position: chr12:4793383-4793146 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 181
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 222, 68

Conread position: 178-395
Cow position: chr12:4797469-4797251 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 166
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 128, 58

Conread position: 201-397
Cow position: chr12:7920386-7920191 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 107, 14

Conread position: 225-371
Cow position: chr12:34275743-34275594 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 225-392
Cow position: chr12:18572751-18572584 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 8, 60

Conread position: 227-396
Cow position: chr12:25445034-25444864 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 131
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 79, 46

Conread position: 228-391
Cow position: chr12:3879860-3880025 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 78, 45

Conread position: 230-379
Cow position: chr12:30226814-30226966 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 65, 48

Conread position: 235-396
Cow position: chr12:8943110-8943274 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 71, 9

Conread position: 240-387
Cow position: chr12:42143271-42143119 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 33, 115

Conread position: 241-391
Cow position: chr12:28210171-28210323 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 9

Conread position: 242-366
Cow position: chr12:22469620-22469493 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 244-371
Cow position: chr12:27430613-27430482 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 244-372
Cow position: chr12:42698140-42698270 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 62, 109

Conread position: 244-381
Cow position: chr12:34165688-34165548 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 109
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 68, 45

Conread position: 244-383
Cow position: chr12:25456516-25456371 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 244-395
Cow position: chr12:7110303-7110148 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 244-397
Cow position: chr12:45167914-45168070 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 53

Conread position: 244-398
Cow position: chr12:37993626-37993784 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 62, 0

Conread position: 244-407
Cow position: chr12:24222416-24222581 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 62, 10

Conread position: 245-387
Cow position: chr12:32051613-32051469 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 44

Conread position: 245-392
Cow position: chr12:35368747-35368596 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 245-397
Cow position: chr12:3675424-3675578 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 59, 0

Conread position: 246-396
Cow position: chr12:42234163-42234006 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 48

Conread position: 246-398
Cow position: chr12:31948216-31948063 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 84, 57

Conread position: 247-388
Cow position: chr12:26357269-26357411 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 58, 36

Conread position: 247-397
Cow position: chr12:7978141-7977989 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 107

Conread position: 248-395
Cow position: chr12:31269255-31269105 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 60, 35

Conread position: 248-397
Cow position: chr12:23574865-23574712 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 47, 40

Conread position: 248-397
Cow position: chr12:41581214-41581063 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 5, 95

Conread position: 248-398
Cow position: chr12:10942389-10942235 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 248-398
Cow position: chr12:25809531-25809377 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 0

Conread position: 249-398
Cow position: chr12:7000504-7000655 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 79

Conread position: 249-398
Cow position: chr12:16056757-16056910 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 249-398
Cow position: chr12:16341992-16341841 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 250-392
Cow position: chr12:25441741-25441594 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 250-397
Cow position: chr12:9914889-9914738 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 250-397
Cow position: chr12:33976298-33976148 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 56, 28

Conread position: 250-398
Cow position: chr12:35770925-35771073 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 25

Conread position: 251-398
Cow position: chr12:4341645-4341796 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 252-379
Cow position: chr12:24397067-24397196 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 54, 26

Conread position: 252-379
Cow position: chr12:39149954-39150087 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 252-392
Cow position: chr12:26868716-26868859 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 63, 97

Conread position: 252-395
Cow position: chr12:18523667-18523515 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 252-395
Cow position: chr12:42254764-42254619 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 26

Conread position: 252-396
Cow position: chr12:7457447-7457593 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 56, 120

Conread position: 252-396
Cow position: chr12:12532394-12532541 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 45

Conread position: 252-396
Cow position: chr12:30661854-30662000 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 26

Conread position: 252-397
Cow position: chr12:21780259-21780111 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 54, 26

Conread position: 252-397
Cow position: chr12:24152437-24152285 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 26

Conread position: 252-397
Cow position: chr12:25355658-25355805 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 56, 123

Conread position: 252-397
Cow position: chr12:26749854-26750003 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 252-397
Cow position: chr12:35241008-35241156 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 56, 37

Conread position: 252-397
Cow position: chr12:42967092-42966949 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 56, 37

Conread position: 252-397
Cow position: chr12:45001970-45002118 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 49, 0

Conread position: 254-371
Cow position: chr12:35664052-35663939 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 93
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 254-390
Cow position: chr12:3586214-3586074 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 52, 0

Conread position: 254-391
Cow position: chr12:14223078-14222936 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 107
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 254-396
Cow position: chr12:27563281-27563427 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 48, 0

Conread position: 254-397
Cow position: chr12:42181033-42181180 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 48, 0

Conread position: 254-398
Cow position: chr12:33323399-33323548 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 33, 0

Conread position: 254-399
Cow position: chr12:11109850-11109701 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 255-397
Cow position: chr12:4866912-4866766 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 257-392
Cow position: chr12:26147076-26147216 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 257-397
Cow position: chr12:15163232-15163089 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 53, 111

Conread position: 258-397
Cow position: chr12:15700173-15700027 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 9, 64

Conread position: 259-392
Cow position: chr12:43854984-43854848 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 112
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 47, 94

Conread position: 260-392
Cow position: chr12:29057479-29057343 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 45, 0

Conread position: 260-396
Cow position: chr12:38774152-38774293 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 260-397
Cow position: chr12:11587864-11587723 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 260-398
Cow position: chr12:4720037-4719895 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 262-397
Cow position: chr12:6210071-6210209 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 47, 19

Conread position: 266-392
Cow position: chr12:44517654-44517784 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 0

Conread position: 271-397
Cow position: chr12:18103534-18103660 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 39, 7

Conread position: 272-397
Cow position: chr12:3623772-3623643 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 272-397
Cow position: chr12:40157947-40158073 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 34, 60

Conread position: 274-398
Cow position: chr12:45680353-45680225 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 275-384
Cow position: chr12:44559925-44559814 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 31, 100

Conread position: 278-393
Cow position: chr12:23106009-23105890 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 99
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 278-397
Cow position: chr12:4135149-4135026 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 27, 0

Conread position: 278-397
Cow position: chr12:23855904-23855788 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 25

Show alignments to all cow chromosomes.