Cow genome map

Conread name: Ss1.1-Pig3-SRG8019N06.5

Conread position: 98-398
Cow position: chr15:31175611-31175893 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 203
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 224, 84

Conread position: 126-267
Cow position: chr15:2140765-2140908 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 6, 20

Conread position: 135-260
Cow position: chr15:9497863-9497738 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 95
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 136-360
Cow position: chr15:13613440-13613644 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 169, 11

Conread position: 136-365
Cow position: chr15:12693356-12693597 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 76, 0

Conread position: 137-355
Cow position: chr15:1984136-1984355 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 169, 82

Conread position: 137-392
Cow position: chr15:6273026-6272793 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 188
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 53, 70

Conread position: 138-262
Cow position: chr15:12656347-12656223 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 138-371
Cow position: chr15:13250958-13251177 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 175
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 168, 95

Conread position: 138-392
Cow position: chr15:35441224-35440985 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 189
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 168, 36

Conread position: 141-393
Cow position: chr15:51633229-51632964 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 77, 218

Conread position: 143-367
Cow position: chr15:24953676-24953452 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 131, 24

Conread position: 144-265
Cow position: chr15:17261526-17261405 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 144-395
Cow position: chr15:10737886-10737644 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 95, 142

Conread position: 146-396
Cow position: chr15:5044624-5044376 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 63

Conread position: 149-398
Cow position: chr15:17664397-17664141 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 189
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 150, 38

Conread position: 151-397
Cow position: chr15:5566780-5567026 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 107, 161

Conread position: 177-339
Cow position: chr15:42461994-42462155 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 128, 29

Conread position: 177-398
Cow position: chr15:14261369-14261156 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 131, 59

Conread position: 200-395
Cow position: chr15:39316941-39316742 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 159
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 106, 0

Conread position: 200-397
Cow position: chr15:21389263-21389065 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 12

Conread position: 208-362
Cow position: chr15:23927972-23927816 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 98, 26

Conread position: 210-397
Cow position: chr15:35945445-35945631 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 146
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 92, 10

Conread position: 221-392
Cow position: chr15:5072164-5071988 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 125
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 29, 0

Conread position: 221-397
Cow position: chr15:39520091-39520270 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 140
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 23

Conread position: 223-397
Cow position: chr15:225869-225702 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 150, 23

Conread position: 223-398
Cow position: chr15:38935338-38935511 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 97, 23

Conread position: 224-381
Cow position: chr15:20725991-20725832 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 92, 138

Conread position: 224-398
Cow position: chr15:21166496-21166322 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 84, 23

Conread position: 228-396
Cow position: chr15:10431741-10431914 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 140
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 54, 0

Conread position: 232-391
Cow position: chr15:44280035-44280198 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 126
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 73, 0

Conread position: 234-396
Cow position: chr15:22871549-22871710 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 72, 88

Conread position: 237-398
Cow position: chr15:27900571-27900408 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 71, 8

Conread position: 239-397
Cow position: chr15:39621277-39621440 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 0

Conread position: 242-381
Cow position: chr15:42190388-42190529 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 22, 110

Conread position: 242-395
Cow position: chr15:12870921-12870764 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 242-397
Cow position: chr15:13554300-13554455 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 8

Conread position: 243-372
Cow position: chr15:5964159-5964030 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 67, 103

Conread position: 243-397
Cow position: chr15:22984523-22984676 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 66, 35

Conread position: 244-370
Cow position: chr15:23780122-23779997 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 0

Conread position: 244-395
Cow position: chr15:17162140-17162295 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 244-396
Cow position: chr15:5726270-5726426 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 125
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 64, 0

Conread position: 244-397
Cow position: chr15:2141358-2141201 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 62, 0

Conread position: 244-397
Cow position: chr15:33976750-33976586 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 0

Conread position: 245-395
Cow position: chr15:915893-915743 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 62, 30

Conread position: 245-396
Cow position: chr15:20459362-20459205 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 245-397
Cow position: chr15:10608359-10608204 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 245-397
Cow position: chr15:31024939-31025094 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 61, 0

Conread position: 246-387
Cow position: chr15:12357566-12357709 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 37

Conread position: 247-381
Cow position: chr15:4500651-4500789 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 59, 0

Conread position: 247-398
Cow position: chr15:12596-12751 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 59, 0

Conread position: 248-417
Cow position: chr15:4485104-4485276 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 60, 26

Conread position: 249-391
Cow position: chr15:22939375-22939229 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 249-397
Cow position: chr15:18776800-18776649 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 11

Conread position: 249-397
Cow position: chr15:39286458-39286307 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 250-392
Cow position: chr15:31637253-31637398 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 28

Conread position: 250-395
Cow position: chr15:52432294-52432446 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 56, 0

Conread position: 250-397
Cow position: chr15:16583739-16583594 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 122

Conread position: 250-397
Cow position: chr15:43626421-43626571 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 119
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 56, 31

Conread position: 251-398
Cow position: chr15:9465629-9465780 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 57, 0

Conread position: 252-397
Cow position: chr15:4248104-4248250 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 23

Conread position: 252-397
Cow position: chr15:5158327-5158476 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 54, 0

Conread position: 252-397
Cow position: chr15:20534497-20534348 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 63, 0

Conread position: 252-397
Cow position: chr15:32324252-32324106 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 94

Conread position: 252-397
Cow position: chr15:36793541-36793392 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 27

Conread position: 252-398
Cow position: chr15:20487250-20487100 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 252-398
Cow position: chr15:31028704-31028554 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 252-398
Cow position: chr15:36435158-36435308 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 53, 0

Conread position: 252-399
Cow position: chr15:17196101-17196251 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 53, 146

Conread position: 253-397
Cow position: chr15:35205199-35205044 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 14, 37

Conread position: 253-397
Cow position: chr15:36388245-36388393 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 55, 0

Conread position: 253-398
Cow position: chr15:12203503-12203652 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 253-398
Cow position: chr15:17233147-17233296 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 254-397
Cow position: chr15:21941890-21941744 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 48, 87

Conread position: 254-397
Cow position: chr15:31928941-31928794 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 52, 0

Conread position: 254-398
Cow position: chr15:52482873-52482725 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 23, 36

Conread position: 254-398
Cow position: chr15:53163976-53164124 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 36

Conread position: 256-396
Cow position: chr15:2953177-2953033 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 256-397
Cow position: chr15:41528015-41527874 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 105

Conread position: 257-397
Cow position: chr15:9781428-9781569 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 8, 114

Conread position: 259-397
Cow position: chr15:795062-794919 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 260-396
Cow position: chr15:1297702-1297840 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 15

Conread position: 260-397
Cow position: chr15:24797845-24797708 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 113, 49

Conread position: 260-398
Cow position: chr15:9106995-9107137 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 116
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 261-397
Cow position: chr15:14176537-14176397 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 0

Conread position: 261-397
Cow position: chr15:15154263-15154402 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 0

Conread position: 261-397
Cow position: chr15:26919313-26919173 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 0

Conread position: 262-391
Cow position: chr15:49922097-49922230 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 0

Conread position: 263-390
Cow position: chr15:20370491-20370359 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 263-398
Cow position: chr15:28924792-28924652 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 264-398
Cow position: chr15:31857556-31857694 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 265-392
Cow position: chr15:1804372-1804238 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 38, 0

Conread position: 266-391
Cow position: chr15:5717680-5717806 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 107, 0

Conread position: 266-397
Cow position: chr15:6037486-6037353 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 110
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 38, 12

Conread position: 266-397
Cow position: chr15:9497533-9497398 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 41, 0

Conread position: 271-397
Cow position: chr15:47843279-47843149 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 272-397
Cow position: chr15:21821951-21821822 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 273-397
Cow position: chr15:44658337-44658461 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 100, 105

Conread position: 273-398
Cow position: chr15:49491621-49491747 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 37, 16

Conread position: 274-391
Cow position: chr15:6128988-6128870 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 102
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 104, 79

Conread position: 275-371
Cow position: chr15:16230198-16230297 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 279-397
Cow position: chr15:37205028-37205150 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.