Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8019N06.5 |
| Conread position: | 121-328 |
| Cow position: | chr19:43498666-43498876 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 50, 87 |
| Conread position: | 132-268 |
| Cow position: | chr19:24664131-24664267 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 9, 93 |
| Conread position: | 136-244 |
| Cow position: | chr19:25825905-25825799 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 136-397 |
| Cow position: | chr19:11424090-11424339 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 59 |
| Conread position: | 137-391 |
| Cow position: | chr19:33237396-33237156 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 169, 27 |
| Conread position: | 137-395 |
| Cow position: | chr19:20092772-20093016 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 236, 10 |
| Conread position: | 141-395 |
| Cow position: | chr19:35233445-35233675 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 232, 23 |
| Conread position: | 142-387 |
| Cow position: | chr19:9733338-9733580 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 144-268 |
| Cow position: | chr19:47559166-47559041 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 144-368 |
| Cow position: | chr19:42778061-42777856 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 144-371 |
| Cow position: | chr19:43642578-43642791 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 162, 28 |
| Conread position: | 144-373 |
| Cow position: | chr19:54919605-54919848 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 144-398 |
| Cow position: | chr19:12036283-12036533 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 157, 75 |
| Conread position: | 144-398 |
| Cow position: | chr19:22438869-22438621 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 229, 98 |
| Conread position: | 145-263 |
| Cow position: | chr19:18344265-18344382 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 156-396 |
| Cow position: | chr19:30886606-30886373 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 150, 47 |
| Conread position: | 179-397 |
| Cow position: | chr19:19919262-19919485 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 120 |
| Conread position: | 199-347 |
| Cow position: | chr19:11754413-11754562 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 205-385 |
| Cow position: | chr19:55175304-55175492 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 209-398 |
| Cow position: | chr19:53840683-53840495 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 97, 30 |
| Conread position: | 216-397 |
| Cow position: | chr19:7675393-7675210 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 90, 33 |
| Conread position: | 218-397 |
| Cow position: | chr19:18921078-18921271 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 220-396 |
| Cow position: | chr19:53378854-53378679 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 90, 17 |
| Conread position: | 221-371 |
| Cow position: | chr19:1553862-1553711 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 23 |
| Conread position: | 223-397 |
| Cow position: | chr19:39361297-39361116 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 223-398 |
| Cow position: | chr19:31691187-31691008 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 225-397 |
| Cow position: | chr19:4800895-4800718 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 228-401 |
| Cow position: | chr19:43202841-43203017 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 74, 68 |
| Conread position: | 229-392 |
| Cow position: | chr19:39648928-39649095 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 238-395 |
| Cow position: | chr19:54915553-54915714 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 244-397 |
| Cow position: | chr19:22134018-22134173 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 110 |
| Conread position: | 244-397 |
| Cow position: | chr19:22449797-22449950 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 57 |
| Conread position: | 244-398 |
| Cow position: | chr19:34757870-34758027 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 62, 10 |
| Conread position: | 245-389 |
| Cow position: | chr19:38717208-38717364 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 245-391 |
| Cow position: | chr19:43373171-43373021 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 246-396 |
| Cow position: | chr19:46094505-46094659 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 246-397 |
| Cow position: | chr19:6344204-6344050 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 76 |
| Conread position: | 246-397 |
| Cow position: | chr19:42236159-42236004 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 246-398 |
| Cow position: | chr19:43647549-43647388 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 247-361 |
| Cow position: | chr19:51637170-51637053 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 247-383 |
| Cow position: | chr19:2042216-2042077 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 18, 114 |
| Conread position: | 248-367 |
| Cow position: | chr19:52568347-52568468 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 32 |
| Conread position: | 248-380 |
| Cow position: | chr19:15076071-15076207 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 248-396 |
| Cow position: | chr19:46300551-46300398 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 249-397 |
| Cow position: | chr19:10081201-10081051 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 250-392 |
| Cow position: | chr19:40051266-40051412 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 250-397 |
| Cow position: | chr19:30007310-30007168 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 250-397 |
| Cow position: | chr19:36845375-36845226 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 250-397 |
| Cow position: | chr19:39254318-39254469 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 250-398 |
| Cow position: | chr19:25382560-25382712 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 252-395 |
| Cow position: | chr19:12698443-12698298 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 252-395 |
| Cow position: | chr19:34166491-34166349 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 15 |
| Conread position: | 252-397 |
| Cow position: | chr19:2220950-2221099 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 252-397 |
| Cow position: | chr19:8185327-8185179 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 22 |
| Conread position: | 252-397 |
| Cow position: | chr19:17354981-17354834 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 252-397 |
| Cow position: | chr19:20622779-20622630 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 252-397 |
| Cow position: | chr19:21817088-21816943 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 252-397 |
| Cow position: | chr19:30227645-30227496 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 252-397 |
| Cow position: | chr19:38021564-38021420 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 121, 63 |
| Conread position: | 252-397 |
| Cow position: | chr19:52750633-52750782 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 252-398 |
| Cow position: | chr19:5912835-5912981 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 109 |
| Conread position: | 252-398 |
| Cow position: | chr19:14253757-14253607 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 256-384 |
| Cow position: | chr19:52356372-52356241 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 256-397 |
| Cow position: | chr19:15362575-15362724 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 256-397 |
| Cow position: | chr19:22816896-22817031 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 256-397 |
| Cow position: | chr19:34819065-34819212 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 256-397 |
| Cow position: | chr19:39781641-39781496 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 260-395 |
| Cow position: | chr19:39613050-39613187 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 57, 18 |
| Conread position: | 260-397 |
| Cow position: | chr19:21176626-21176765 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 263-395 |
| Cow position: | chr19:43292168-43292029 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 263-397 |
| Cow position: | chr19:25526398-25526260 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 270-378 |
| Cow position: | chr19:1978288-1978177 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 278-398 |
| Cow position: | chr19:30552116-30551992 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
Show alignments to all cow chromosomes.