Cow genome map

Conread name: Ss1.1-Pig3-SRG8019N06.5

Conread position: 131-397
Cow position: chr20:34777478-34777210 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 192
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 174, 39

Conread position: 135-395
Cow position: chr20:7709504-7709749 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 196
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 171, 67

Conread position: 135-395
Cow position: chr20:33438705-33438948 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 192
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 13, 79

Conread position: 136-272
Cow position: chr20:35447662-35447801 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 136-347
Cow position: chr20:24522590-24522378 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 145
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 166, 86

Conread position: 136-395
Cow position: chr20:20056209-20056455 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 201
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 233, 68

Conread position: 138-397
Cow position: chr20:9537412-9537169 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 45, 99

Conread position: 143-395
Cow position: chr20:13944039-13943797 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 59

Conread position: 144-266
Cow position: chr20:30939302-30939178 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 144-334
Cow position: chr20:18100864-18100677 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 148
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 78, 49

Conread position: 144-398
Cow position: chr20:31798926-31799174 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 162, 92

Conread position: 145-397
Cow position: chr20:6890980-6890744 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 227, 89

Conread position: 148-354
Cow position: chr20:36023123-36023326 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 157, 71

Conread position: 153-392
Cow position: chr20:17846229-17845996 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 27, 97

Conread position: 172-398
Cow position: chr20:13983620-13983385 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 173
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 90, 0

Conread position: 177-389
Cow position: chr20:32988573-32988792 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 157
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 34, 143

Conread position: 193-392
Cow position: chr20:14100197-14100398 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 108, 168

Conread position: 200-367
Cow position: chr20:15846986-15846816 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 25, 63

Conread position: 200-396
Cow position: chr20:16405840-16405643 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 6

Conread position: 206-367
Cow position: chr20:41274671-41274837 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 76, 0

Conread position: 212-396
Cow position: chr20:35591432-35591618 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 93, 63

Conread position: 216-367
Cow position: chr20:26059013-26059169 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 216-392
Cow position: chr20:11444292-11444114 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 139

Conread position: 222-381
Cow position: chr20:7622778-7622937 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 80, 53

Conread position: 225-397
Cow position: chr20:35460334-35460512 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 58, 102

Conread position: 238-396
Cow position: chr20:580727-580889 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 62, 0

Conread position: 241-398
Cow position: chr20:34202826-34202663 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 7, 0

Conread position: 243-395
Cow position: chr20:35208017-35208174 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 31

Conread position: 244-384
Cow position: chr20:9730180-9730041 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 106
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 33, 72

Conread position: 244-395
Cow position: chr20:23870632-23870786 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 244-397
Cow position: chr20:12995816-12995975 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 88

Conread position: 244-398
Cow position: chr20:36779543-36779700 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 34

Conread position: 245-386
Cow position: chr20:2823056-2822913 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 61, 136

Conread position: 245-397
Cow position: chr20:11481949-11482104 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 246-397
Cow position: chr20:40782143-40781991 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 60, 13

Conread position: 247-395
Cow position: chr20:20739103-20739252 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 58, 138

Conread position: 247-397
Cow position: chr20:16548095-16548248 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 125
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 59, 31

Conread position: 247-397
Cow position: chr20:23506290-23506440 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 126, 11

Conread position: 248-372
Cow position: chr20:5078454-5078327 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 106
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 60, 19

Conread position: 248-390
Cow position: chr20:28594470-28594323 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 58, 110

Conread position: 248-391
Cow position: chr20:23936002-23936148 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 60, 76

Conread position: 248-397
Cow position: chr20:7416984-7417137 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 249-382
Cow position: chr20:2148011-2148147 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 81

Conread position: 249-395
Cow position: chr20:6096313-6096463 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 249-397
Cow position: chr20:40158082-40157930 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 250-391
Cow position: chr20:34221658-34221515 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 52, 0

Conread position: 250-397
Cow position: chr20:4945074-4945221 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 18

Conread position: 250-397
Cow position: chr20:12126125-12126274 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 16

Conread position: 250-397
Cow position: chr20:29845231-29845081 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 46

Conread position: 252-365
Cow position: chr20:17544803-17544687 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 252-395
Cow position: chr20:6054330-6054477 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 51, 0

Conread position: 252-395
Cow position: chr20:10200525-10200378 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 252-396
Cow position: chr20:24712020-24711871 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 252-396
Cow position: chr20:34097774-34097925 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 56, 0

Conread position: 252-397
Cow position: chr20:20934558-20934702 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 56, 23

Conread position: 252-397
Cow position: chr20:39016693-39016844 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 0

Conread position: 252-398
Cow position: chr20:6248422-6248572 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 252-398
Cow position: chr20:39962754-39962604 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 253-397
Cow position: chr20:354723-354867 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 57, 100

Conread position: 253-397
Cow position: chr20:19751483-19751337 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 53, 20

Conread position: 253-397
Cow position: chr20:23590571-23590717 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 53, 119

Conread position: 254-397
Cow position: chr20:3141750-3141604 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 56, 35

Conread position: 254-397
Cow position: chr20:14283099-14282950 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 255-397
Cow position: chr20:22485036-22484892 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 19, 5

Conread position: 255-398
Cow position: chr20:38925674-38925822 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 9, 0

Conread position: 256-384
Cow position: chr20:35442107-35442239 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 256-392
Cow position: chr20:11359458-11359596 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 22

Conread position: 256-397
Cow position: chr20:16941115-16941257 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 50, 10

Conread position: 257-397
Cow position: chr20:20967495-20967351 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 118
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 257-397
Cow position: chr20:21372482-21372338 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 49, 0

Conread position: 257-397
Cow position: chr20:35727756-35727900 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 0

Conread position: 258-397
Cow position: chr20:361017-361156 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 48, 82

Conread position: 258-397
Cow position: chr20:21345606-21345459 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 48, 0

Conread position: 260-386
Cow position: chr20:31845114-31845244 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 260-390
Cow position: chr20:39415921-39415787 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 260-397
Cow position: chr20:13652196-13652337 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 263-397
Cow position: chr20:11008338-11008200 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 110
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 0

Conread position: 264-401
Cow position: chr20:4332300-4332156 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 44, 10

Conread position: 267-385
Cow position: chr20:2316261-2316383 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 96
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 267-397
Cow position: chr20:5703636-5703501 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 108
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 270-397
Cow position: chr20:16492234-16492102 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 36, 0

Conread position: 272-393
Cow position: chr20:22959189-22959313 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 36, 50

Conread position: 272-395
Cow position: chr20:17251876-17251750 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 35, 100

Conread position: 275-397
Cow position: chr20:31323943-31323818 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 31, 78

Conread position: 278-397
Cow position: chr20:9433740-9433617 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 281-401
Cow position: chr20:5950493-5950617 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.