Cow genome map

Conread name: Ss1.1-Pig3-SRG8019N06.5

Conread position: 121-395
Cow position: chr23:20002502-20002249 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 195
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 252, 24

Conread position: 136-254
Cow position: chr23:30661946-30662064 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 136-371
Cow position: chr23:1503820-1503588 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 181
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 170, 58

Conread position: 136-397
Cow position: chr23:1768057-1767818 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 186
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 237, 59

Conread position: 136-397
Cow position: chr23:4967067-4966811 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 170, 11

Conread position: 136-397
Cow position: chr23:18402057-18402300 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 193
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 170, 35

Conread position: 137-274
Cow position: chr23:4578829-4578968 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 122, 0

Conread position: 138-379
Cow position: chr23:31299448-31299181 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 189
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 138-397
Cow position: chr23:38502879-38503116 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 195
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 219, 68

Conread position: 142-265
Cow position: chr23:25379187-25379064 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 144-301
Cow position: chr23:6565014-6565166 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 27, 0

Conread position: 144-339
Cow position: chr23:18829254-18829451 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 148
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 77, 132

Conread position: 144-367
Cow position: chr23:12602237-12602454 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 160, 61

Conread position: 144-391
Cow position: chr23:20434817-20435069 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 67, 88

Conread position: 144-392
Cow position: chr23:24479725-24479967 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 185
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 229, 98

Conread position: 144-398
Cow position: chr23:4916919-4916673 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 175
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 123, 0

Conread position: 148-366
Cow position: chr23:14739705-14739470 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 168
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 0

Conread position: 149-370
Cow position: chr23:5174807-5174558 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 65, 0

Conread position: 152-360
Cow position: chr23:5386841-5387063 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 172
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 68, 0

Conread position: 176-397
Cow position: chr23:18787066-18787294 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 158
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 19, 72

Conread position: 198-387
Cow position: chr23:38845788-38845598 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 110, 45

Conread position: 204-397
Cow position: chr23:1742539-1742347 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 138
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 102, 47

Conread position: 208-387
Cow position: chr23:32546091-32546265 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 100, 23

Conread position: 222-397
Cow position: chr23:14895506-14895684 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 27, 7

Conread position: 223-397
Cow position: chr23:26283887-26283714 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 83, 23

Conread position: 224-397
Cow position: chr23:39780921-39780744 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 82, 0

Conread position: 225-354
Cow position: chr23:38846009-38845875 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 225-397
Cow position: chr23:3244303-3244479 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 10, 22

Conread position: 226-395
Cow position: chr23:1397874-1398047 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 138
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 80, 0

Conread position: 226-398
Cow position: chr23:25358877-25358718 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 235-361
Cow position: chr23:29972545-29972413 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 104
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 38, 0

Conread position: 236-397
Cow position: chr23:4104552-4104388 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 29, 119

Conread position: 236-397
Cow position: chr23:25371973-25371816 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 137, 42

Conread position: 237-393
Cow position: chr23:3105038-3104878 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 238-367
Cow position: chr23:26591759-26591890 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 103
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 100

Conread position: 238-398
Cow position: chr23:4336219-4336058 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 68, 115

Conread position: 242-397
Cow position: chr23:13673883-13674042 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 244-371
Cow position: chr23:204425-204297 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 64, 39

Conread position: 244-371
Cow position: chr23:23114205-23114075 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 101
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 62, 0

Conread position: 244-392
Cow position: chr23:3835447-3835600 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 107

Conread position: 244-397
Cow position: chr23:4877507-4877350 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 52, 45

Conread position: 244-397
Cow position: chr23:10553862-10554019 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 244-397
Cow position: chr23:21336337-21336494 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 131
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 29, 35

Conread position: 244-397
Cow position: chr23:38455031-38455189 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 245-391
Cow position: chr23:4327556-4327705 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 63, 33

Conread position: 245-397
Cow position: chr23:3234635-3234792 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 41, 0

Conread position: 245-397
Cow position: chr23:11129378-11129223 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 63, 51

Conread position: 245-398
Cow position: chr23:18415911-18416062 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 65, 7

Conread position: 245-398
Cow position: chr23:36018296-36018139 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 0

Conread position: 248-397
Cow position: chr23:4968391-4968534 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 125, 27

Conread position: 248-397
Cow position: chr23:30951098-30950944 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 25, 31

Conread position: 249-397
Cow position: chr23:306664-306512 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 249-397
Cow position: chr23:307597-307445 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 59, 0

Conread position: 250-366
Cow position: chr23:33232564-33232680 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 16

Conread position: 250-396
Cow position: chr23:1701310-1701162 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 58, 18

Conread position: 250-397
Cow position: chr23:21309272-21309422 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 251-397
Cow position: chr23:5799323-5799471 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 252-375
Cow position: chr23:1480778-1480652 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 252-384
Cow position: chr23:1798249-1798113 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 0

Conread position: 252-392
Cow position: chr23:12405684-12405825 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 54, 21

Conread position: 252-395
Cow position: chr23:40737879-40738027 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 0

Conread position: 252-397
Cow position: chr23:4003785-4003634 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 252-397
Cow position: chr23:4972904-4972756 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 56, 92

Conread position: 252-398
Cow position: chr23:1759383-1759236 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 23

Conread position: 252-398
Cow position: chr23:20563833-20563685 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 57, 29

Conread position: 254-397
Cow position: chr23:34356777-34356631 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 66, 0

Conread position: 254-398
Cow position: chr23:187315-187167 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 61, 0

Conread position: 255-397
Cow position: chr23:13599476-13599332 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 53, 117

Conread position: 256-394
Cow position: chr23:21423902-21423760 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 257-397
Cow position: chr23:14569367-14569511 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 258-398
Cow position: chr23:13137803-13137947 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 260-397
Cow position: chr23:5686491-5686632 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 260-398
Cow position: chr23:33622019-33622161 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 260-398
Cow position: chr23:40648600-40648743 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 261-396
Cow position: chr23:35930081-35929941 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 0

Conread position: 261-397
Cow position: chr23:41348495-41348634 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 116
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 47, 17

Conread position: 262-367
Cow position: chr23:18417221-18417113 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 89
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 262-396
Cow position: chr23:6994854-6994992 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 262-397
Cow position: chr23:3190996-3191135 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 264-395
Cow position: chr23:24779416-24779551 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 42, 0

Conread position: 267-398
Cow position: chr23:2406025-2405887 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 106
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 272-397
Cow position: chr23:57043-57174 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 110
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 34, 0

Conread position: 272-397
Cow position: chr23:16447570-16447697 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 34, 86

Conread position: 272-397
Cow position: chr23:16699923-16700052 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 108
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 34, 0

Conread position: 275-397
Cow position: chr23:283277-283403 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 275-397
Cow position: chr23:35247483-35247357 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 278-396
Cow position: chr23:4054330-4054208 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 100
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 285-397
Cow position: chr23:23409839-23409723 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 61

Conread position: 296-397
Cow position: chr23:1803815-1803918 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 13, 0

Show alignments to all cow chromosomes.