Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8019N06.5 |
| Conread position: | 122-396 |
| Cow position: | chr25:21894616-21894898 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 5 |
| Conread position: | 123-348 |
| Cow position: | chr25:31343816-31344060 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 163 |
| Conread position: | 133-343 |
| Cow position: | chr25:16316006-16316214 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 10, 44 |
| Conread position: | 135-348 |
| Cow position: | chr25:12899968-12899762 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 135-385 |
| Cow position: | chr25:6942150-6942401 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 167, 71 |
| Conread position: | 136-254 |
| Cow position: | chr25:7554896-7555014 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-353 |
| Cow position: | chr25:25828944-25828738 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 165, 70 |
| Conread position: | 136-398 |
| Cow position: | chr25:22341761-22341511 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 169, 33 |
| Conread position: | 137-253 |
| Cow position: | chr25:36762694-36762577 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 137-297 |
| Cow position: | chr25:10653987-10654143 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 137-396 |
| Cow position: | chr25:38421905-38421652 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 187 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 158, 29 |
| Conread position: | 137-397 |
| Cow position: | chr25:18906116-18905870 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 165, 69 |
| Conread position: | 144-265 |
| Cow position: | chr25:12064469-12064352 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 144-308 |
| Cow position: | chr25:7258927-7259090 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 144-394 |
| Cow position: | chr25:13672630-13672383 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 162, 44 |
| Conread position: | 144-397 |
| Cow position: | chr25:26161195-26160950 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 162, 7 |
| Conread position: | 144-397 |
| Cow position: | chr25:36017769-36017527 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 152, 43 |
| Conread position: | 151-381 |
| Cow position: | chr25:23016252-23016021 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 90, 20 |
| Conread position: | 200-394 |
| Cow position: | chr25:13550875-13551077 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 110, 77 |
| Conread position: | 202-397 |
| Cow position: | chr25:12252629-12252823 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 106, 73 |
| Conread position: | 205-352 |
| Cow position: | chr25:14134433-14134282 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 224-398 |
| Cow position: | chr25:34241941-34242120 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 225-371 |
| Cow position: | chr25:21926282-21926430 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 81, 24 |
| Conread position: | 226-398 |
| Cow position: | chr25:26052063-26051886 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 229-386 |
| Cow position: | chr25:14197019-14196857 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 229-397 |
| Cow position: | chr25:12064205-12064033 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 239-397 |
| Cow position: | chr25:10504194-10504352 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 69, 120 |
| Conread position: | 243-397 |
| Cow position: | chr25:35109125-35109284 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 244-367 |
| Cow position: | chr25:13805156-13805029 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 244-367 |
| Cow position: | chr25:36135997-36136124 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 244-397 |
| Cow position: | chr25:61792-61635 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 244-397 |
| Cow position: | chr25:4009233-4009078 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 244-397 |
| Cow position: | chr25:15218274-15218121 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 62, 126 |
| Conread position: | 244-397 |
| Cow position: | chr25:22750864-22751022 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 245-391 |
| Cow position: | chr25:7581286-7581440 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 246-381 |
| Cow position: | chr25:23323628-23323491 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 246-397 |
| Cow position: | chr25:11585660-11585503 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 247-397 |
| Cow position: | chr25:31762470-31762623 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 248-396 |
| Cow position: | chr25:14225498-14225348 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 248-398 |
| Cow position: | chr25:25861213-25861369 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 249-397 |
| Cow position: | chr25:1823961-1824112 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 251-398 |
| Cow position: | chr25:40904695-40904846 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 252-390 |
| Cow position: | chr25:5808079-5807937 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 252-397 |
| Cow position: | chr25:432914-433063 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 252-397 |
| Cow position: | chr25:7380706-7380854 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 252-397 |
| Cow position: | chr25:17474379-17474527 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 56, 118 |
| Conread position: | 252-397 |
| Cow position: | chr25:33311192-33311342 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 252-398 |
| Cow position: | chr25:9002805-9002656 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 252-399 |
| Cow position: | chr25:31514315-31514164 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 254-397 |
| Cow position: | chr25:11956935-11956789 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 255-397 |
| Cow position: | chr25:6473956-6474102 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 256-390 |
| Cow position: | chr25:28187815-28187953 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 258-397 |
| Cow position: | chr25:30817017-30816874 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 260-381 |
| Cow position: | chr25:36369944-36369820 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 260-381 |
| Cow position: | chr25:36375635-36375511 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 99 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 48, 63 |
| Conread position: | 260-397 |
| Cow position: | chr25:33101481-33101620 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 260-398 |
| Cow position: | chr25:5474104-5474246 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 260-398 |
| Cow position: | chr25:9615963-9615821 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 263-398 |
| Cow position: | chr25:13325703-13325564 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 266-397 |
| Cow position: | chr25:16921676-16921812 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 266-398 |
| Cow position: | chr25:18564606-18564471 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 44, 90 |
| Conread position: | 267-397 |
| Cow position: | chr25:30656530-30656661 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 84 |
| Conread position: | 267-398 |
| Cow position: | chr25:10791696-10791830 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 268-397 |
| Cow position: | chr25:13503552-13503418 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 270-397 |
| Cow position: | chr25:14513231-14513099 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 102 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 273-397 |
| Cow position: | chr25:10643197-10643324 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 5 |
| Conread position: | 283-398 |
| Cow position: | chr25:16064995-16064876 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 295-397 |
| Cow position: | chr25:38425448-38425346 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 20 |
Show alignments to all cow chromosomes.