Cow genome map

Conread name: Ss1.1-Pig3-SRG8019N06.5

Conread position: 135-370
Cow position: chr28:11365260-11365507 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 11, 47

Conread position: 136-302
Cow position: chr28:32521974-32522135 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 136-306
Cow position: chr28:24629726-24629554 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 134, 38

Conread position: 136-364
Cow position: chr28:8259068-8258850 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 170, 35

Conread position: 136-397
Cow position: chr28:4841133-4841401 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 166, 0

Conread position: 138-281
Cow position: chr28:8408357-8408504 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 68, 0

Conread position: 138-398
Cow position: chr28:8408964-8408725 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 235, 68

Conread position: 139-272
Cow position: chr28:28075568-28075698 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 144-268
Cow position: chr28:8147076-8147206 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 57, 0

Conread position: 144-384
Cow position: chr28:2743315-2743086 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 162, 89

Conread position: 144-398
Cow position: chr28:10999429-10999678 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 50, 163

Conread position: 144-398
Cow position: chr28:14934200-14933949 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 184
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 75

Conread position: 145-397
Cow position: chr28:19025741-19026013 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 187
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 61, 0

Conread position: 148-392
Cow position: chr28:16110164-16109936 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 179
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 148, 23

Conread position: 150-398
Cow position: chr28:19079604-19079854 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 181
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 151, 69

Conread position: 201-387
Cow position: chr28:29041863-29042052 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 105, 41

Conread position: 201-392
Cow position: chr28:25487857-25488050 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 136
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 66, 52

Conread position: 205-385
Cow position: chr28:12385103-12385289 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 76

Conread position: 205-391
Cow position: chr28:17398049-17398236 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 22, 97

Conread position: 205-391
Cow position: chr28:17414288-17414477 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 134
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 26, 76

Conread position: 205-397
Cow position: chr28:8147672-8147871 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 140
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 130

Conread position: 205-397
Cow position: chr28:20313462-20313269 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 103, 12

Conread position: 207-396
Cow position: chr28:31109819-31110011 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 81, 68

Conread position: 210-397
Cow position: chr28:5867904-5867719 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 64, 15

Conread position: 225-398
Cow position: chr28:7388600-7388776 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 132

Conread position: 226-397
Cow position: chr28:5650569-5650745 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 230-397
Cow position: chr28:27161164-27161334 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 76, 97

Conread position: 231-398
Cow position: chr28:13090365-13090534 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 81, 7

Conread position: 233-397
Cow position: chr28:2752334-2752502 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 73, 0

Conread position: 238-397
Cow position: chr28:25677183-25677350 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 134
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 27, 0

Conread position: 241-384
Cow position: chr28:4022824-4022678 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 65, 11

Conread position: 241-384
Cow position: chr28:34097468-34097612 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 114
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 13, 63

Conread position: 241-396
Cow position: chr28:5152753-5152594 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 35

Conread position: 241-398
Cow position: chr28:3200610-3200450 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 67, 11

Conread position: 242-386
Cow position: chr28:9418816-9418963 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 63, 12

Conread position: 243-391
Cow position: chr28:24707047-24706895 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 63, 0

Conread position: 243-397
Cow position: chr28:18797470-18797312 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 9, 78

Conread position: 244-392
Cow position: chr28:18770228-18770081 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 62, 10

Conread position: 244-392
Cow position: chr28:32179846-32179694 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 120

Conread position: 244-397
Cow position: chr28:4823749-4823596 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 10, 57

Conread position: 244-398
Cow position: chr28:2772859-2772704 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 64, 130

Conread position: 245-391
Cow position: chr28:19222004-19222153 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 64, 33

Conread position: 246-367
Cow position: chr28:5245497-5245379 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 45

Conread position: 246-397
Cow position: chr28:2899136-2898981 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 60, 0

Conread position: 246-398
Cow position: chr28:5236457-5236613 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 64, 0

Conread position: 248-398
Cow position: chr28:8347872-8347722 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 57, 31

Conread position: 250-395
Cow position: chr28:26743769-26743620 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 251-397
Cow position: chr28:19038879-19039027 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 117
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 50, 22

Conread position: 252-387
Cow position: chr28:11398656-11398795 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 50, 0

Conread position: 252-391
Cow position: chr28:4163442-4163581 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 108
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 109

Conread position: 252-392
Cow position: chr28:6321956-6321814 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 58, 0

Conread position: 252-395
Cow position: chr28:6358272-6358420 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 252-396
Cow position: chr28:3011129-3011276 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 118
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 54, 93

Conread position: 252-396
Cow position: chr28:19262446-19262594 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 109
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 252-397
Cow position: chr28:5630237-5630090 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 0

Conread position: 252-397
Cow position: chr28:7697841-7697986 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 54, 108

Conread position: 252-397
Cow position: chr28:8149491-8149640 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 252-397
Cow position: chr28:17680763-17680614 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 0

Conread position: 252-397
Cow position: chr28:20397230-20397378 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 122
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 51, 26

Conread position: 252-398
Cow position: chr28:5232076-5231929 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 56, 38

Conread position: 252-398
Cow position: chr28:11307376-11307527 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 118
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 0

Conread position: 252-398
Cow position: chr28:13048143-13048292 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 252-398
Cow position: chr28:20173976-20173827 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 36, 57

Conread position: 252-398
Cow position: chr28:26982597-26982747 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 252-398
Cow position: chr28:27218463-27218314 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 56, 83

Conread position: 252-400
Cow position: chr28:4307755-4307908 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 253-387
Cow position: chr28:6059328-6059468 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 253-397
Cow position: chr28:5144381-5144529 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 253-401
Cow position: chr28:30081585-30081736 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 55, 36

Conread position: 254-396
Cow position: chr28:3726071-3726218 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 52, 24

Conread position: 254-397
Cow position: chr28:5236012-5235873 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 119, 24

Conread position: 256-396
Cow position: chr28:5817978-5817833 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 59, 22

Conread position: 257-397
Cow position: chr28:11866529-11866673 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 51, 0

Conread position: 258-391
Cow position: chr28:23047753-23047618 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 48, 102

Conread position: 258-396
Cow position: chr28:17601419-17601561 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 50, 0

Conread position: 258-397
Cow position: chr28:2819910-2819767 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 50, 0

Conread position: 259-397
Cow position: chr28:4881104-4881248 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 260-390
Cow position: chr28:4355679-4355547 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 260-391
Cow position: chr28:11559499-11559634 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 0

Conread position: 260-396
Cow position: chr28:7008845-7008985 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 261-397
Cow position: chr28:10615814-10615954 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 113
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 47, 0

Conread position: 262-397
Cow position: chr28:3143747-3143883 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 91

Conread position: 269-391
Cow position: chr28:26784118-26784243 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 100
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 35, 0

Conread position: 272-384
Cow position: chr28:16692044-16691928 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 272-397
Cow position: chr28:15362702-15362571 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 105
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 19, 0

Conread position: 275-397
Cow position: chr28:4765794-4765666 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 275-398
Cow position: chr28:11346369-11346496 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 0

Show alignments to all cow chromosomes.