Cow genome map

Conread name: Ss1.1-Pig3-SRG8021B14.5

Conread position: 544-705
Cow position: chr11:77013988-77013826 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 128
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 29, 129

Conread position: 546-708
Cow position: chr11:23220580-23220405 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 87

Conread position: 547-669
Cow position: chr11:6581046-6580925 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 95
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 547-697
Cow position: chr11:27461900-27462045 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 547-697
Cow position: chr11:81143332-81143487 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 119, 31

Conread position: 549-700
Cow position: chr11:28078697-28078544 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 117, 10

Conread position: 551-708
Cow position: chr11:17559325-17559173 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 19, 92

Conread position: 553-708
Cow position: chr11:58186079-58185925 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 118, 0

Conread position: 554-669
Cow position: chr11:55744678-55744560 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 554-701
Cow position: chr11:24551596-24551438 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 106, 7

Conread position: 554-708
Cow position: chr11:33271638-33271473 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 555-669
Cow position: chr11:12080051-12079935 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 34, 107

Conread position: 555-669
Cow position: chr11:12555097-12555213 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 555-669
Cow position: chr11:16315081-16314965 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 97
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 555-701
Cow position: chr11:39462824-39462673 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 111, 104

Conread position: 555-708
Cow position: chr11:7571825-7571667 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 0

Conread position: 555-708
Cow position: chr11:52690320-52690478 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 104, 65

Conread position: 556-669
Cow position: chr11:17889523-17889636 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 92
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 556-692
Cow position: chr11:54130235-54130095 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 18, 120

Conread position: 556-696
Cow position: chr11:18483995-18484134 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 26, 90

Conread position: 556-699
Cow position: chr11:62742441-62742594 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 120
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 557-656
Cow position: chr11:21637395-21637496 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 557-670
Cow position: chr11:67345452-67345572 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 558-659
Cow position: chr11:70710015-70709912 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 559-655
Cow position: chr11:49210613-49210712 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 559-669
Cow position: chr11:25968652-25968762 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 559-669
Cow position: chr11:30165712-30165602 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 92
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 559-669
Cow position: chr11:62102242-62102355 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 559-669
Cow position: chr11:83042037-83042149 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 559-701
Cow position: chr11:44176794-44176645 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 126
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 102, 60

Conread position: 559-708
Cow position: chr11:15772511-15772671 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 560-684
Cow position: chr11:80824103-80823976 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 560-708
Cow position: chr11:37565069-37564916 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 98, 0

Conread position: 560-708
Cow position: chr11:77227732-77227581 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 561-659
Cow position: chr11:13592940-13592840 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 84
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 561-665
Cow position: chr11:15591281-15591384 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 561-669
Cow position: chr11:66939391-66939500 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 561-670
Cow position: chr11:68870464-68870576 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 94
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 561-679
Cow position: chr11:55334118-55334001 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 110, 0

Conread position: 561-700
Cow position: chr11:45671181-45671319 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 93, 82

Conread position: 561-701
Cow position: chr11:37099972-37100123 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 120
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 21, 0

Conread position: 562-669
Cow position: chr11:22102558-22102667 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 562-669
Cow position: chr11:83398105-83397998 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 562-701
Cow position: chr11:21322305-21322445 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 111

Conread position: 562-708
Cow position: chr11:18699070-18698922 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 20, 116

Conread position: 563-667
Cow position: chr11:75874574-75874679 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 0

Conread position: 563-669
Cow position: chr11:28092650-28092542 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 91
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 21, 0

Conread position: 563-669
Cow position: chr11:68909335-68909443 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 563-708
Cow position: chr11:82732957-82733107 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 0

Conread position: 564-669
Cow position: chr11:8828206-8828101 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 565-700
Cow position: chr11:2937477-2937613 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 565-708
Cow position: chr11:17369722-17369573 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 116
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 566-701
Cow position: chr11:51683410-51683265 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 96, 0

Conread position: 566-708
Cow position: chr11:1980069-1980225 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 123
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 567-706
Cow position: chr11:59744189-59744050 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 104

Conread position: 568-661
Cow position: chr11:46335042-46334949 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 568-669
Cow position: chr11:41278381-41278278 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 568-697
Cow position: chr11:46784655-46784527 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 103, 0

Conread position: 568-708
Cow position: chr11:1485042-1485184 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 86, 0

Conread position: 569-669
Cow position: chr11:26823304-26823203 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 11, 0

Conread position: 569-700
Cow position: chr11:57170419-57170548 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 570-708
Cow position: chr11:10095535-10095386 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 571-708
Cow position: chr11:63485121-63484980 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 113
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 576-700
Cow position: chr11:3267483-3267605 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 78

Conread position: 578-659
Cow position: chr11:48932407-48932488 (view UCSC Genome Browser custom track)
Alignm length: 82
Alignm identity: 73
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 578-664
Cow position: chr11:10294572-10294486 (view UCSC Genome Browser custom track)
Alignm length: 87
Alignm identity: 77
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 578-668
Cow position: chr11:17859971-17860062 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 79
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 578-669
Cow position: chr11:53817037-53816946 (view UCSC Genome Browser custom track)
Alignm length: 92
Alignm identity: 78
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 578-689
Cow position: chr11:67600960-67600846 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 578-708
Cow position: chr11:21830029-21830167 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 83, 70

Conread position: 583-708
Cow position: chr11:57608289-57608417 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 77, 44

Conread position: 588-670
Cow position: chr11:26343274-26343192 (view UCSC Genome Browser custom track)
Alignm length: 83
Alignm identity: 75
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 588-699
Cow position: chr11:13042976-13043094 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 98
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 0

Show alignments to all cow chromosomes.