Cow genome map
| Conread name: | Ss1.1-Pig3-SRG8021B14.5 |
| Conread position: | 541-668 |
| Cow position: | chr13:23680557-23680686 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 542-669 |
| Cow position: | chr13:32282874-32283003 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 104 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 544-670 |
| Cow position: | chr13:32017759-32017635 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 14 |
| Conread position: | 547-708 |
| Cow position: | chr13:11686197-11686041 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 549-669 |
| Cow position: | chr13:9800283-9800398 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 551-708 |
| Cow position: | chr13:9551127-9551286 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 103, 27 |
| Conread position: | 552-708 |
| Cow position: | chr13:56035094-56034934 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 106, 26 |
| Conread position: | 553-669 |
| Cow position: | chr13:49795805-49795917 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 553-708 |
| Cow position: | chr13:11146811-11146982 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 553-708 |
| Cow position: | chr13:17823190-17823025 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 554-669 |
| Cow position: | chr13:23975405-23975287 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 554-700 |
| Cow position: | chr13:21981204-21981057 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 104, 23 |
| Conread position: | 554-708 |
| Cow position: | chr13:43576774-43576939 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 555-663 |
| Cow position: | chr13:21024749-21024857 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 99, 23 |
| Conread position: | 555-666 |
| Cow position: | chr13:32186029-32186141 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 92 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 555-669 |
| Cow position: | chr13:10925160-10925044 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 555-669 |
| Cow position: | chr13:14383837-14383955 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 555-669 |
| Cow position: | chr13:20654097-20653983 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 555-679 |
| Cow position: | chr13:8481919-8482046 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 555-701 |
| Cow position: | chr13:2529187-2529032 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 555-708 |
| Cow position: | chr13:242393-242560 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 555-708 |
| Cow position: | chr13:13797054-13796886 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 555-708 |
| Cow position: | chr13:45593690-45593846 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 103, 22 |
| Conread position: | 556-669 |
| Cow position: | chr13:28536557-28536442 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 556-708 |
| Cow position: | chr13:24796648-24796803 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 53 |
| Conread position: | 556-708 |
| Cow position: | chr13:27028140-27027977 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 556-708 |
| Cow position: | chr13:37030113-37030267 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 557-660 |
| Cow position: | chr13:17624082-17624189 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 557-660 |
| Cow position: | chr13:28605632-28605525 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 557-696 |
| Cow position: | chr13:10845381-10845517 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 557-708 |
| Cow position: | chr13:5659999-5659842 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 558-669 |
| Cow position: | chr13:19177937-19178048 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 558-708 |
| Cow position: | chr13:49356282-49356124 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 559-659 |
| Cow position: | chr13:10099156-10099054 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 559-659 |
| Cow position: | chr13:17619361-17619462 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 559-660 |
| Cow position: | chr13:29507381-29507480 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 559-669 |
| Cow position: | chr13:620477-620369 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 559-669 |
| Cow position: | chr13:15162869-15162757 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 559-700 |
| Cow position: | chr13:24753662-24753804 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 560-663 |
| Cow position: | chr13:36666625-36666522 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 84 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 560-669 |
| Cow position: | chr13:15868878-15868989 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 561-660 |
| Cow position: | chr13:54690135-54690236 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 87 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 561-669 |
| Cow position: | chr13:15993151-15993262 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 561-669 |
| Cow position: | chr13:41157168-41157276 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 561-708 |
| Cow position: | chr13:10220726-10220886 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 561-708 |
| Cow position: | chr13:53847350-53847196 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 562-660 |
| Cow position: | chr13:52929203-52929301 (view UCSC Genome Browser custom track) |
| Alignm length: | 99 |
| Alignm identity: | 83 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-668 |
| Cow position: | chr13:37418574-37418468 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 562-701 |
| Cow position: | chr13:51106896-51107037 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 90, 86 |
| Conread position: | 562-708 |
| Cow position: | chr13:29802397-29802540 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 562-708 |
| Cow position: | chr13:40490989-40491140 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 563-660 |
| Cow position: | chr13:14940570-14940667 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 82 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 563-668 |
| Cow position: | chr13:26377650-26377543 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 563-708 |
| Cow position: | chr13:20854689-20854531 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 564-669 |
| Cow position: | chr13:22729632-22729527 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 85 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 564-672 |
| Cow position: | chr13:17971494-17971598 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 564-707 |
| Cow position: | chr13:9124702-9124849 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 90, 136 |
| Conread position: | 564-708 |
| Cow position: | chr13:3153519-3153675 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 564-708 |
| Cow position: | chr13:34533156-34533007 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 18, 80 |
| Conread position: | 565-659 |
| Cow position: | chr13:1339371-1339276 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 81 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 565-660 |
| Cow position: | chr13:14351356-14351449 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 565-697 |
| Cow position: | chr13:33974521-33974648 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 565-699 |
| Cow position: | chr13:4965173-4965311 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 567-700 |
| Cow position: | chr13:25561407-25561537 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 568-677 |
| Cow position: | chr13:6113754-6113645 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 101, 95 |
| Conread position: | 568-697 |
| Cow position: | chr13:57986154-57986024 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 91, 105 |
| Conread position: | 569-700 |
| Cow position: | chr13:14575994-14576130 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 569-708 |
| Cow position: | chr13:47676159-47676010 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 570-700 |
| Cow position: | chr13:9108893-9108758 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 570-708 |
| Cow position: | chr13:6996934-6997078 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 570-708 |
| Cow position: | chr13:37946606-37946464 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 571-701 |
| Cow position: | chr13:24715030-24715159 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 572-700 |
| Cow position: | chr13:17745040-17745165 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 572-708 |
| Cow position: | chr13:50646848-50646706 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 573-660 |
| Cow position: | chr13:21955287-21955200 (view UCSC Genome Browser custom track) |
| Alignm length: | 88 |
| Alignm identity: | 76 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-669 |
| Cow position: | chr13:14411674-14411770 (view UCSC Genome Browser custom track) |
| Alignm length: | 97 |
| Alignm identity: | 82 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-659 |
| Cow position: | chr13:20520098-20520179 (view UCSC Genome Browser custom track) |
| Alignm length: | 82 |
| Alignm identity: | 73 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 578-700 |
| Cow position: | chr13:6980713-6980837 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 578-708 |
| Cow position: | chr13:55007982-55007847 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 579-700 |
| Cow position: | chr13:20784383-20784507 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 580-669 |
| Cow position: | chr13:18874922-18875011 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 78 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-669 |
| Cow position: | chr13:40541319-40541230 (view UCSC Genome Browser custom track) |
| Alignm length: | 90 |
| Alignm identity: | 77 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.