Cow genome map

Conread name: Ss1.1-Pig3-SRG8021B14.5

Conread position: 527-708
Cow position: chr2:39566444-39566633 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 21, 0

Conread position: 530-700
Cow position: chr2:47879484-47879310 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 126
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 539-660
Cow position: chr2:72003708-72003833 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 100
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 14

Conread position: 547-668
Cow position: chr2:39187600-39187479 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 36, 115

Conread position: 548-700
Cow position: chr2:63568937-63568779 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 113, 12

Conread position: 549-660
Cow position: chr2:24116856-24116967 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 95
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 549-708
Cow position: chr2:46614631-46614462 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 22, 43

Conread position: 550-669
Cow position: chr2:36124660-36124541 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 104
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 32, 5

Conread position: 550-669
Cow position: chr2:44022577-44022695 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 9, 0

Conread position: 550-669
Cow position: chr2:67810813-67810932 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 32, 9

Conread position: 550-704
Cow position: chr2:28452723-28452880 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 119
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 108, 28

Conread position: 551-698
Cow position: chr2:39371640-39371486 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 124
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 61

Conread position: 553-669
Cow position: chr2:2486071-2485952 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 553-704
Cow position: chr2:44215724-44215566 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 108, 0

Conread position: 554-669
Cow position: chr2:15348619-15348504 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 554-707
Cow position: chr2:43990996-43990834 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 555-660
Cow position: chr2:29806157-29806053 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 88
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 555-669
Cow position: chr2:29394785-29394898 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 555-671
Cow position: chr2:34557858-34557743 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 6, 0

Conread position: 555-675
Cow position: chr2:39864653-39864528 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 102
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 555-700
Cow position: chr2:52484743-52484891 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 118
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 100, 59

Conread position: 555-701
Cow position: chr2:13013297-13013158 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 556-648
Cow position: chr2:77990071-77989979 (view UCSC Genome Browser custom track)
Alignm length: 93
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 556-652
Cow position: chr2:15720853-15720756 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 556-660
Cow position: chr2:16751654-16751759 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 88
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 25, 5

Conread position: 557-669
Cow position: chr2:72315590-72315704 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 558-669
Cow position: chr2:34643487-34643377 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 92
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 20, 0

Conread position: 558-671
Cow position: chr2:23713093-23712980 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 558-701
Cow position: chr2:16847405-16847249 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 559-658
Cow position: chr2:35935111-35935008 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 0

Conread position: 559-659
Cow position: chr2:28820590-28820489 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 23, 0

Conread position: 559-668
Cow position: chr2:60181806-60181920 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 93
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 559-669
Cow position: chr2:38683279-38683390 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 57, 0

Conread position: 559-669
Cow position: chr2:49428602-49428492 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 88
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 560-659
Cow position: chr2:10628315-10628414 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 84
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 560-660
Cow position: chr2:29551100-29551202 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 87
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 560-669
Cow position: chr2:14826496-14826387 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 87
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 560-669
Cow position: chr2:56350695-56350806 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 560-669
Cow position: chr2:73789618-73789727 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 560-704
Cow position: chr2:77295242-77295096 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 561-667
Cow position: chr2:69937609-69937502 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 561-669
Cow position: chr2:15734633-15734527 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 561-669
Cow position: chr2:25922628-25922520 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 91
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 71

Conread position: 561-669
Cow position: chr2:42897886-42897776 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 561-669
Cow position: chr2:67302236-67302126 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 90
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 561-708
Cow position: chr2:69003260-69003109 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 83, 54

Conread position: 562-668
Cow position: chr2:22759757-22759866 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 562-669
Cow position: chr2:9725885-9725992 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 562-669
Cow position: chr2:57007132-57007025 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 562-700
Cow position: chr2:44051523-44051377 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 87, 0

Conread position: 562-701
Cow position: chr2:56021532-56021379 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 562-706
Cow position: chr2:19211846-19211992 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 104, 65

Conread position: 563-663
Cow position: chr2:46019402-46019502 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 85
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 563-708
Cow position: chr2:3728238-3728087 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 22, 0

Conread position: 564-667
Cow position: chr2:1741951-1741848 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 86
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 564-669
Cow position: chr2:59396838-59396943 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 564-708
Cow position: chr2:6039228-6039074 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 98, 125

Conread position: 564-708
Cow position: chr2:13369871-13369715 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 564-708
Cow position: chr2:44313503-44313658 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 565-708
Cow position: chr2:39229020-39228871 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 73, 0

Conread position: 565-708
Cow position: chr2:56010943-56011085 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 101, 0

Conread position: 566-660
Cow position: chr2:28751410-28751314 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 82
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 567-708
Cow position: chr2:55004493-55004348 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 115
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 99, 0

Conread position: 568-669
Cow position: chr2:23935603-23935502 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 83
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 570-708
Cow position: chr2:64810-64945 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 108
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 83, 0

Conread position: 571-708
Cow position: chr2:65603432-65603574 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 572-669
Cow position: chr2:5300804-5300706 (view UCSC Genome Browser custom track)
Alignm length: 99
Alignm identity: 84
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 576-684
Cow position: chr2:65059244-65059138 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 82, 0

Conread position: 576-704
Cow position: chr2:15058861-15058999 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 578-665
Cow position: chr2:38969286-38969373 (view UCSC Genome Browser custom track)
Alignm length: 88
Alignm identity: 76
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 578-697
Cow position: chr2:80177399-80177519 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 578-700
Cow position: chr2:1036188-1036320 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 107
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 578-700
Cow position: chr2:24271413-24271287 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 102
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 92, 0

Conread position: 578-700
Cow position: chr2:74964647-74964529 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 100
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 86, 59

Conread position: 578-701
Cow position: chr2:12873606-12873479 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 107
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 82, 0

Conread position: 579-659
Cow position: chr2:9687323-9687403 (view UCSC Genome Browser custom track)
Alignm length: 81
Alignm identity: 73
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 580-669
Cow position: chr2:26635273-26635362 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 580-669
Cow position: chr2:49716889-49716978 (view UCSC Genome Browser custom track)
Alignm length: 90
Alignm identity: 77
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 589-699
Cow position: chr2:39815108-39815214 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 91
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 0

Show alignments to all cow chromosomes.